Array 1 203305-204248 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134365.1 Cardiobacterium hominis strain NCTC10426 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 203305 36 100.0 34 .................................... ACCGCTGACATCACTTCGGTCAAATCAACATAAC 203375 36 100.0 34 .................................... TTGCGCAGGTCGACCACGTCCCGTCGGACATCGG 203445 36 100.0 33 .................................... TCAGTGAACTTCTTTATAGTAAGCCCAATATTC 203514 36 100.0 33 .................................... GCTAAAGCTGCAATTGATAGCAGTGCGAAAATT 203583 36 100.0 32 .................................... GTAACCGGCTGCGCTTTGCAAGACGCGCAGAT 203651 36 100.0 33 .................................... TTCTCAAGAACATCATCAGCATCCGCGATATAA 203720 36 100.0 33 .................................... AAACACCGGGCGGGGTGTATTCTCGGCAAAATC 203789 36 100.0 32 .................................... GATTTGTTGGCGTTCTTCGATCAGTTCCATCA 203857 36 97.2 33 ...A................................ CCATGGGTTTTCTCCTGTTTTAGAAAAAGAAAA 203926 36 100.0 34 .................................... TCGCATTCCTCGCGCTGCGCGATGCGTACACCTG 203996 36 100.0 35 .................................... GACGACTGCGAAAAACGTTATATAAATCTGCATAT 204067 36 100.0 33 .................................... CCCTGTGGGCTTGCCCATTGATTTGAGGTATCG 204136 36 97.2 41 ...............................A.... CTCGCCGTCCCGACATGGGCGGCTTCTTGCTTGGATTTTGG 204213 36 80.6 0 ...AG...C...................T..T.C.T | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 98.2 34 ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Left flank : CGCGCTCACCGCCGCCTTGCTCAATGGCGCAGCGCTTGCCGACGCCGTACAAAGCGCGGGCGACTGGGTGGTTGCCGCCCTGCGCTATACCGCCGCAGAAAACAGCGGCGAGCTGCGCTTCCCGCCGCAATAACTCGCCCCAAGAACCATAGAAAACAGAAACGGGAAAACCGCCGATAGCCCCCTCTCCCCTCTCTTGCTGCGCAAACCATACTTGCGCAGCAAGAGAGAAAAGGAGTGCGCGCTAAAACAGCACGTTTTACAGCTTGGCATCCTGAAATACCACAAATAACAACGTTGCAACCACATCCAAAACAAATGACAAACAGCGCTTAAGCGGTGCATACAAAAAACCAATACCCCTCAAAAAACTGCTAAAATACATCCCATAACAATCCCCAACAAAATCCGAATGATAAAGCCCAACTTTTTGCAGATTACAAAAGTTGGAAAACCCCCTTCTAATAACCTAAAAACAAAAAAGAAAAACACACCTCGCT # Right flank : TAAAAAATGCCGACATTCGTCGGCATTTTTTTATCGGTGATGCGCGCGTTGGATGCGCGGCGAGGTTTCGCAGGCGGGTTCAGGTCATCTCCCTGCCGCTTCCGCCTGCGCCTCCAGCGCGCTTTCTTTGACGATGCACATCGGTTTGCCGCTGACCGGGCAGGTGTACGGCGCGGCATTGACCGCGAAGACGTCGGCGAGCAGCGCCGGGGTCAGCACTTCCGCCGGGCTGCCTTCGGCAACGAGTTGCCCCGCTTTCAGCACGATGAGGTGGTCGCAGTAGCGCGCCGCCTGGTTCAGGTCGTGCAGGACGGTGATGACGGTCGTCCCTTTTTCTTGTTGGGCGCGCATCATGTCCATCAGCGCGATTTGGTGGTTGAGGTCGAGGTAGGTGGTCGGTTCGTCCAGAAGCAGGTACGGCGTTTCCTGCGCCAAGGTCATGGCGAGGAAGGCGCGCTGTTGTTGGCCGCCGGAGAGTTCGTCCACGCGCTTGTCGGCGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA // Array 2 705656-705492 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134365.1 Cardiobacterium hominis strain NCTC10426 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 705655 30 100.0 36 .............................. CGATGTGGTCTATGTCGATCAAGGCAAGCCGGTGCG 705589 30 100.0 38 .............................. CGCGGTGGTCATTCTCACCGATGACAACACGCACAGCG 705521 30 96.7 0 ..........C................... | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 98.9 38 TCGCTCCCCATGCGGGAGCGCGAATTGAAA # Left flank : AGGCATTGACCTCGCCCTGCGCGTCAGCCGCGCGCCGATACCGAGCCTTGTCGTCCGGCGGCTGTTTGAAGTGCGCTTCGCGCTGGTCGCCTCGCCCGCCTACATCCGCCGCCACGGCCTGCCACGAACGCTTGAGGACGCTGCCAGCCACAGCGCCGTTCTCCCATCGTATGCCGACATCAGCCGCATGGACTGCCGCCGTGGCGACGAAAGCCACACCCTGCACCTGCACAGCGCCCTGCAAAGCAACAGCACCGTCATGCTGCACCAACTGCTGCTTGCGGGCAGCGGCATCGGCTACCTGCCGCTGTGGCTGGCGCAGGACGACCTCACCGCCGGGCGGCTGGTGCGCCTCCTGCCGGACTGGCAGTTACGCAGCATCACCCTGCACGCCGCCTACCCCGACCGCCGTCACCTCAGCGCGAAAATCCGCAGCTTCATTGATTTTCTGGTGGAGAAGGCGAAAACGGTAGAGGGCGATTGAAGTGACAGGGTGTTAT # Right flank : TTTACAAAACTCGCAGCGGTCGCCACGAGCGGAAAATCGCTCCCCACGCCCTAACCGTTCCCCATTTTTGGGCGCTCCGCGCCGTTCAAATGTGCACGGTCTTCGCTACGGAATGTTGTGTGTATAGCGGGCTGTTGTATGGAAATAAATGGGATGGCGATACCGCGCCAACCCGCAACACCGCTTTGGTGGGCGGTTTTTTTCACCGCACCGTTGCGGGTAAAGCAAAACCCGCCGGGTGGCGGGTTTTGGCGAGTGTGTTGTGTGTAGTTATTGGTTCGGTTGTGGCGCGGTGCTTTATTTTTCCAGCAGGGCGCGCAGCATCCACGCGGTTTTTTCGTGGGTTTGCATGCGGGTGGTGAGGAGGTCGGCAGTCGCTTCGTCGTTGGCTTCATCGACTGCCGGGAAGAAGGCGCGGCAGGTGCGCACTACGGTTTCTTGTCCGTCCACCAGTTCCTGGATCATGGTGAGGGCGTCGGTTTTGCCGTTGCATTCTTTGA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGAGCGCGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 708968-708278 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134365.1 Cardiobacterium hominis strain NCTC10426 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 708967 32 100.0 34 ................................ TGCGCTTCTACCGCAGCTACATGGGGCGCGATTT 708901 32 100.0 33 ................................ ACGGCAAAGACCGGGAAAACCCATGCAGGGGCG 708836 32 100.0 33 ................................ GGATGCCTTCTTGGCACGCTTTGTGGGGCTGAC 708771 32 100.0 34 ................................ CGCGTTTCGCTTTTGGCGTCATCGTTGCGACACA 708705 32 100.0 34 ................................ GTCCAACGCGGCCAGCACCCTGTCCATCGCCAAG 708639 32 100.0 33 ................................ GCTGAGGCAGGTAGCAGGCATGCGCTACTGGAG 708574 32 100.0 34 ................................ CTTTGGTGGATTTGTTGTTATCGCCGCTGTATCG 708508 32 100.0 35 ................................ CTGCGCTGGAGCAGCGATGGCACAAAAATCGAAAA 708441 32 100.0 34 ................................ AATAAGTCTCGTGGCGTTTGCCCTGCCGCACGAT 708375 32 96.9 34 ...................T............ CGCCGCGTCGGCGAGGACTTGCGCCGCGTCAATG 708309 32 71.9 0 ...........C.......T.AC.T..T.TGT | ========== ====== ====== ====== ================================ =================================== ================== 11 32 97.2 34 GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : CGCAATATCCACCTTTCTTGATGCGATAATGTTGGTATTGATTACTTACGATATTTCCTTTTCAGATACAGCGGGTGCAAAACGTCTGAGACAAATAGCAGCGCATTGTCAAGATTATGGCGTGCGGGTGCAATATTCCGTTTTTGAATGCGATGTGAATCCCGAACAATGGGTACGGCTAAAAGATAAATTATTACAAACCTACCAGCCGGAAACTGATAGCTTACGGTTCTATATGCTTGGCAGCAAGGGACGTAATAAAATTGAACATCATGGTGCCAAAGCAGCCCCAGATATATTTCGTGATGCATTGATTATCTAGCGCTAACCATTAGTTCTCATCGAAAGGTGGGAGTATTGACGGCAGATATAGCGTGCTGAATAGAAATAGATTTAAACACATAGCATACGAATTGCATCTTACCCTACTGTACTTTGTCTGCTTAGCTAGCGAATAGTGCGCTTTCTATGCAGGCTGTACCTGCCATTGCATGATGGCA # Right flank : AACCAAATGATTTTATTGTGTTCTTCCACTCAATATGAGCATCTTACCCGCAAGCATTGTGGATAACTTGGTGCATAAACTGCGGGGGATTGTGAAATTCACAGTGCGTGCCACAGCTTACACATGACGATGCAGCAATATTGGAAAAATAAACCTTGTTGAAAAACAACGTAGTAAGCAGAAAAACCTGTAAGAAAAGCATTTTTTTAGGTTGCAATTCGCCAAGGCGCGCCAGTATGCGATTTGTGCATAACTTTGCTGTTATCGCCATCCCCCGAATGCTTCATACGGCGCTGCGCCGCCTGACCGGGCATCCATAAAAGAAAGTGGCGAAGTCATTTTTATGGGCAACCCGCGCCGTACAACCGCGTGCTGTCTTCGGCGGCGCGCCTTGTCTGAGGCTTTCCGTGTAATCGCTATAGTACGGGAACTCACCGCTATCGTCGCAGGGTTTTCAGGTGTTGTTTCCGGTGCATCCGGCAATGAAAGTCTGTTTCTGC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 4 964244-962053 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134365.1 Cardiobacterium hominis strain NCTC10426 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 964243 36 100.0 33 .................................... GGCGCGGTCGTACTTGGCGCAGACGTCTGCGGG 964174 36 100.0 34 .................................... CGACAGGCGACGATGTAAGCGCGGGTGACGACGC 964104 36 100.0 33 .................................... CGTGTTAAAGTCAATGTAAACGCCTTCGTCATC 964035 36 100.0 33 .................................... TCACCGTCTTCGTCGTATTCATCTTCGTCAATG 963966 36 100.0 33 .................................... AAACAAAACTTTAGCTAAACTGCTTGGCTGTAC 963897 36 100.0 33 .................................... ACGGCAAGTCCTTTTATTTGAATTTGGTTGAAA 963828 36 100.0 35 .................................... TGCTGTAACGGCAAGCCATTCACATATTCGATACC 963757 36 100.0 34 .................................... TTGGCGTTGTGCGGAAGATTTCAGTTTGAAAGTT 963687 36 100.0 34 .................................... CGCTCTTGTTACGTTATCCCCAGTTTTTATAGAC 963617 36 100.0 33 .................................... GCACCAAGGATAATTTGTTTTAACATGATAGAC 963548 36 100.0 34 .................................... AGGTAGCCTTCGTCGAGGGCTTTTTCTTTAAGTG 963478 36 100.0 34 .................................... TTTTAAGCCTCCTACGGACTATCTATTTAAAGTG 963408 36 100.0 34 .................................... ATAGTTATTGAAAATATCATCGAAATACTGTTCT 963338 36 100.0 33 .................................... CCGCCGACTCGTAATGCTGTGGTGCATAATGCC 963269 36 100.0 34 .................................... GTACTCATGCGGCACTCTCCATTTGCGCTAACAG 963199 36 100.0 33 .................................... TTTCCATCACTTAGGAATTTGATTCCTACTGGC 963130 36 100.0 33 .................................... TTGATAGCTCTATCAACTGGCTTAAGTATACGC 963061 36 100.0 33 .................................... AAAAGAACAATTGCAAATTCAATCATGGGGAAA 962992 36 100.0 33 .................................... GGTTAGGGTTGTGGTTTCGCACCGTTACGCCAG 962923 36 100.0 33 .................................... GCCGAAAAACTAAATTCATAAGCGTCATATCTT 962854 36 100.0 34 .................................... AGATGAGTACTGAATAAGATATCCAGAGGAGGAA 962784 36 100.0 32 .................................... GTTCCTTTCATTCTTTATCAGCGGGCATTAAA 962716 36 100.0 34 .................................... AGAAGGAAGCCTTCTTCACTCGCTTGTTCTTCAA 962646 36 100.0 34 .................................... TACAATCGAGGGCTTGCCAGCAATATACTCAACC 962576 36 100.0 34 .................................... AAAAGCCGCTCGATAAACCTGAAAATCTCGTCAA 962506 36 100.0 33 .................................... CGACAAAATAGATATCTTCTTCTTGGAAGTCAG 962437 36 100.0 32 .................................... GCCCGTTGTTGCCGCGCTTCGCTGCGGTAGTA 962369 36 97.2 34 .........................A.......... CAGGTAGAGATGCACGATCGGTTGCGGGTCATGA 962299 36 100.0 34 .................................... AACGGTAGTTTTGTTTCAATTCGCGCCCCGAAGG 962229 36 100.0 34 .................................... TTCTCGAAATAATCACGTCTTCCCTCCCGGATAG 962159 36 100.0 35 .................................... TGACGGAAGTTGAGGCGGTCGGTTTTTGCCTGGCC 962088 36 88.9 0 ...............................TTTT. | ========== ====== ====== ====== ==================================== =================================== ================== 32 36 99.6 34 ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Left flank : AAGAAAAAACCATGCCCGACTACCTTATCGCCTACGACATAGCAGCGCCCAAGCGCCTACAAAAAATCCACAAACGCCTCTGCGAAGAAGCCATCCCGCTACAAAACAGCACCTTCCTCTACCGCGCCAGCCCCGGCCAATTCGAACACCTCTGGCAAGAACTCGCCCTGATGAGCAAAAACGAAGACGACCTACGAGCCTACCGCCTCCCCGCTGCAAGCCTCTGCTACGAATACCACCCCAAAACCCCGGAAGGCATCTACTGCCTGTAGCCCCTTTCCAAAACCACCCGCAAAAAAACAAAAAAACCGTGCCAGCATAGAAAAAACCAACCAAATACAATAAAATACGCGCGCTATCAGCGAAGCAAAGTCACCCCAAACACCCCATGAAAAACCCTAATAAAAACAACGGCCGAAGCGCCAACTTTTTCACAAAAACAAAAGTTGGAAACACCCCCTGCAACACATTGAAAACAAGGAGAAAAAACACCCCTGACT # Right flank : CTTAATCTGCCCGCTTTTGCGGGCTTTTTTATATGACAAATTTGTCGTTGCAGACTAGCTATAGCAGGTGCGTTATTCTTGTATGTTTGTTAAAACACTGTTTAGACATCTTTAAGCGGTGCGTCACAAAATTGTCAAAACAGATAGATTTTTCTTTCTGGCGTAATGTGCCTGCATCGCAACAAGATGATGCAATGATAAGAGCGATGCCTGCTTCCAGTGTAAAGAACCGCCCAGACGTACCGAGTATCTTTTTTGCGCCCGCTGTCCAGAATTCCACCAAACAGCAATGGGTGCTTGTTTGTTTTACTGATACTGGCTGCACTTATAGCGATACACCGAAAGCCTCAGACAAGGCGCGTCGCTGAAGACAGTACGCGGTTGTACGGCGAAGCGACGCAACGCCGTATGAGGCTTTTGGGGGATTGCTATATATTCTTGAGGTGCCGGTTCTGTCTTAATCAGGCTGGCGATAAAAATCCCATTATTGCGTCTTTTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //