Array 1 81016-80790 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013700.1 Clostridium sporogenes strain AM1195 plasmid pRSJ11_1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 81015 29 100.0 36 ............................. CCGATAGTAAGACTGCTAAAGCAAAACTTCCGATTA 80950 29 100.0 38 ............................. CAAGTGGAAGTCCTTTCAATATTTTTTTTAGTTGTTAA 80883 29 96.6 36 ................G............ TGAGTATTCCAGTTATAGAAATTGGACTATTATTAA 80818 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 99.2 37 GTTTTATCTTAACTATATGGAATGTAAAT # Left flank : GAAGGTCAAAGAGTTGAACAAGATACATTTGTTTGTAAGAGATGTTGGCATAAGATGAATGCTGATTACAATGCAGCTAGAAATATAGCTATGAGTTATAACTATATATCAAAAAAAGAAGAAAGTGAGTATTACAAAAATAACAAAAACATGGTATAATTACTTCAGTTAAGATAATAAGAACAGGGCGATTTAACGTCCTAAGGCTGAGGGATATTTCCACTCGGCAAGGGTTAATTTCGGATATTGTGTTACCATCCGAACATTCCATGATTAATGCGGTTATATACTCATATTTTAATTTTAATTAATAAATTTGCAGTGAAGCTATTTTGGACCTTATGTATTTGAAACCTTGAAATCAATGACATTTGAGTAAGTTCTATATATTACCCAAAAATACTACTGGAGATTTACTGCAGAATAAGGCAAATTAGTTATATGTTTATGCTGTGTAATTTAGCTTATACCAGTAGGTTAAAAGATTTATAAAATTAGGG # Right flank : TGATGATGGATAATTATAGAATTAATATACTATTGCAGTAATAATATAACTATACTATAAGCAGTTGCAGCTGTACTTAGTATTTTTAATATAGATTTTGCATCTCTAAAAATTATATACAATACTATAAAAACAAATAAGAACATTTTTATTATATCTTTATTAATTAGCAAACTGTAGTTCCCCCTTTCTATTATTTGGGTTGATTTATTAAATTTTACTTAAATATGTCATAACAAACAACATTTTAGATGCTCTAGCTTGTCTGAGCTATTTTTATTTTGAATATAAAAAAGATTGTGCAAATTAAATTTAGATTAATAATAATTTTTTTTAACACGGTATATTAAAAGAATATATCGTGTTTTTTTATTTTGAGAAATATTACTATATGTCTAATATAAATAAAGCCAAAGTATTATTGTATTCACTAATTCTTTAAATTATATTAGTAAAAAGGAACAAATTAAGTATAAAGGAGGCGCCTTAAATGAATATAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 130421-130836 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013700.1 Clostridium sporogenes strain AM1195 plasmid pRSJ11_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 130421 29 100.0 37 ............................. TGTTTTTATCTCCGCTTTTTATATTTAATTAGTTATG 130487 29 93.1 30 .................G..........A TTGCAAAAACCTCCTATTTGTATAGCTTAA 130546 29 96.6 36 ........T.................... CTATAAATTTCAGCATGAAAGTCGCAGCAATTATAA 130611 29 96.6 37 ........T.................... CTTAATGAGGAGGTTGTTTAATGAAGAAAAAAATAAG 130677 29 96.6 36 ................G............ AGATTATAAGTTTTACACAACTATGTACTGTTATTG 130742 29 100.0 37 ............................. TACCGAAAAACAAAAAAAGATATAAGATTTTTCATAA 130808 29 82.8 0 ...........T...GG..A......G.. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 95.1 36 TTTAACTTCTACATTATATGTATTTAAAC # Left flank : CGTAAGCTGGGATATCTATATATTACTAGATGAAAATAGTGTTGATAAAAAAATTCTAAATAAATTAAAAGATTATTTGTTAAATAAAAAATGTCACTTTATTCCTTATCTTGGCAAAAATGATCATGCTGCTGATATCACAAATGTTGAACTTATTAACTTAAAATCAATACAAGCACATGAAAAATTAATAAGAATACAAAGTTTATTTTTAACGAATAATTTTAATATTACAGGAGAAAAACATAATCCTAATGAGAGATTAATAATATTAAAAGAAATGTTGCCAACTGAATTAGATGAATTCGATAACTCTTACAAATTTAGCAATTTATCTTTTACTAATCTCATTGTTCAACCAAATACTAGTAAAACATTAATTTATCAGGATTCACTAAGTAATTTATATTTTTTTTAGGAATTTAAAAGTCATATAATGAAAGCATGTTATAATAATTATATAAACATTTTATTATTTACAAATGGCTTATTTTCATTGG # Right flank : CAAACTATAAATAGAAAAAGAGAAGGTGCAAAAATAAAGAAAATTTTACCTGATTTATATATAAATGAGTCCTCAGATGGGTTAATCTTAATAGATAAAATTTCAAAAATCCATTATGAACTAGCAACTGATACCCCTTGTGATAGAAATGATTTAACAGGCTTAAATACCGATTATCAAAACGGTAACTTAAATATACTTATGGAGATTAAGGAAAATTTATCTTTTACTCATATAGTTAGAGATTCACATGGATTTATTTTTGCAGTAGAAATAGCAGATTTATAAAAAAAAGAATACATTTAACTTTTATATGAAATATATTTAAAGATAGTTGTTTTCATTGTAAGCTCTAGTGGCTTTATATGTTTAACTTATACATTAGATGTATTTAAACGTTGTAAAATATGTAGGTGAAGCTAAGGAGTGTAAGTTTAACTTCTACATTGGATGTATTTAAACTCATCGTGCACTTTTCTTATTAGACAAAATTTATCGTT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAACTTCTACATTATATGTATTTAAAC # Alternate repeat : TTTAACTTTTACATTATATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //