Array 1 48155-47272 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCB01000005.1 Methylobacterium sp. 174MFSha1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48154 29 100.0 32 ............................. CAGGCAGCCCGCTCCCCGGGGGCTGCCCACAT 48093 29 100.0 32 ............................. CCCTCCAGGGGACGGAATACGAGGGCGCCGGG 48032 29 100.0 32 ............................. CCCCAGGTCGGAATGATGTGGTCCATCTCGGG 47971 29 100.0 32 ............................. CCCTCCAGGGGACGGAATACGAGGGCGCCGGG 47910 29 100.0 32 ............................. CCCCAGGTCGGAATGATGTGGTCCATCTCGGG 47849 29 100.0 32 ............................. CGTGGTCCGACAACAGGCAGCGGGCGATGCGC 47788 29 100.0 32 ............................. CTCACGCAATGGTCCCAGCGCTCGGGCGATGT 47727 29 100.0 32 ............................. CACCGGCCGGCCTGCTGCTGACGATCGAGCGC 47666 29 100.0 32 ............................. CGCACCCGGGACCTCCGCACCTCCCACAAGGA 47605 29 100.0 32 ............................. ATGATGGTCTCGGAGCTGCTTCGAGCTTCTGC 47544 29 100.0 32 ............................. CACCGGCGCCTCGAACACCACGACCCCCGGAT 47483 29 100.0 32 ............................. ATGATGGTCTCGGAGCTGCTTCGAGCTTCTGC 47422 29 100.0 32 ............................. CACCGGCGCCTCGAACACCACGACCCCCGGAT 47361 29 100.0 32 ............................. ATGCTGTTCGAGCCGCACCGGTTCTACGCGGC 47300 29 93.1 0 ...............C......C...... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : ACGTGCTCGCCGCCGGCGGCCTGCCGCCCCCGGGCGAGCCCGCCGACGCCCAGCCCCCCGCCTTCACCGAGTCGCCCTCCGGCGACGGAGGCCACCGGGGATGAGGATCTGATGAGGATCTCGCGCGGATGATGGTCGTGGTGGTCGAGAACGCGCCCCCGCGCCTGCGCGGCCGCCTCGCGGTCTGGCTCGTCGAGGTGCGGGCGGGGGTCTATGTCGGCCAGTATTCCCGCCGCACCCGCGAGCGGATCTGGGCCGAGGTGCAGGCCGCCATCGGCGAGGGCAACGGCGTCATCGCCTGGACCGCCCAGACCGACATCGGCTACGCCTTCGACACCTGCGGCCGGAACCGCCGCATGCCGGTCGACCTCGACGGCCTGCCCCTGGTGGCGTTCCACCCCGACGAGACCCCGCTCTGACCGGACCCGGAACGGAGCGGAAACGCCGGTGCGTTCTTTGACATCGTGAAAGGTGAGGTGTATCAAGCACTTCTGGGAAGA # Right flank : CTGCACCATCATCCGCGCCCCCCCGCCGCCAAATCGCCGATTGACCCAGGCCCGCCGACCGGCTTTCCGTAGCGCGACTTCTCCCACCCGGACGATACATCCATGAAGCGCGCCCGCCGCACCAAGATCGTCGCGACCCTTGGCCCGGCCTCCGAGGATCCGGCGGTGATCGAGGCGCTGTTCGCGGCCGGCGCCGACGTCTTTCGCATCAACATGAGCCACCTGCCGCGCGAGCGCCTGGGCGAGCGGGTGGCGACGATCCGGGGCATCGAGCAGAAGCTCAGGCGCCCGATCGCCGTGCTGGTCGACCTGCAGGGCCCGAAGCTCCGGGTCGGGCGCTTCGCCGACGACGCGGCGATGATCGAGAACGGCCAGAGCTTCGTCCTCGACGACGATCCGACGCCCGGCGACGCGACCCGGGTCCACCTGCCCCACCCCGAGATCCTCTCGGCGCTCGAGCCCGGCCACGCGGTGATCGTCGACGACGGCAAGCTGCGCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 343432-344558 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCB01000005.1 Methylobacterium sp. 174MFSha1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 343432 29 100.0 32 ............................. CGCTATCAGGTCAGCTCGTCCAAGCCCGGGTA 343493 29 100.0 32 ............................. CCCAACCTACCGTCGGCTCAGTCGGCGGCCAC 343554 29 100.0 32 ............................. GCTCATTTCGGTTTTTCGGTTTCGATTTCCTC 343615 29 100.0 32 ............................. GCCGGCAACACCACCGTCGGCCGCCACACCAT 343676 29 100.0 32 ............................. AACCTGTCCCGCGCGGTCGGCGTCGTAGCAGG 343737 29 96.6 32 .........................G... GATCTGGAGGCGGTGTTGAGCACGGTGGCGAT 343798 29 100.0 32 ............................. TTGCCCTTGCGGGCGCGGCGGTGACTGGAGCT 343859 29 100.0 32 ............................. GCTGTCGACAGTCTCGCACGCAACGTGTTGCA 343920 29 100.0 32 ............................. CGGACGTCCGGCGCTCGAGGTACGCTGGCGCT 343981 29 100.0 32 ............................. GCTGCAACCCGCACGATGATCGCCCTTCTTTG 344042 29 100.0 32 ............................. ACCCTGACGCTGGGCACCGGTACCGGCACCGT 344103 29 100.0 32 ............................. GCGGGCCCGGGAGATGCCCCCCTTCAGCAGGC 344164 29 100.0 32 ............................. ATCGCCCTCGGCCTCTACCGCTCGGTCCTGGC 344225 29 100.0 32 ............................. GCCTTGCGGAGGGCGTCGTCGGTGGATCCGGG 344286 29 100.0 32 ............................. ATCGCCCTCGGCCTCTACCGCTCGGTCCTGGC 344347 29 100.0 32 ............................. GCCTTGCGGAGGGCGTCGTCGGTGGATCCGGG 344408 29 100.0 32 ............................. ACGGTGACCGGGACCATCAGGGAGACGGCCAG 344469 29 89.7 32 .......TT...................C GCGGCGCGAACGTGATAGCTCGCCACCGTGCT 344530 29 93.1 0 ........................G...C | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GCCCTCCTGGGCGCCGGGCCGGCGCGGGCTGACCTGCGGATGTGCAACATGACCGGCAGCCGCATCGGCATCGCCCTGGGCTACCGGGATTCCGGCGGCTGGGTGACGGAGGGCTGGTGGAACCTCTCGGCCAAGGGCTGCGAGACCCTGCTCAAGGGAGCCCTGGCCGCCCGCTACTACTACGTCTTCGCGGTCGATTACGACCGGGGCGGCGAGTGGAGCGGCCGCTCCCTGATGTGCACCCGCGACCGCGAGTTCACCATCCGGGGCGTCGAGGACTGCCTCGCCCGCGGCTACGACCGCAACGGCTTCTTCGAGGTCGATACGGGGGAGCAGAAGAGCTGGACGATCCAGCTGACGGATCCGGGCCGCGCGGGGCCGTGACGCGGGGCGGAGCGGGCGGCTTCGGAGCCGGCTGAGACGCCCTGGAACGGGTGCGGAACGCCGGTGCGCTGTTTGACATCGTGAAATGCCAAGCGCATCAATCACTTCCAGAAGGA # Right flank : CTGCCGGTCGATCGACGCACGCTCGACCTGAGCCATCGGTTCGGCCGGCGGATGCGCGATGTTCGGTGCGCCCGACCGAGTCGATGCGATCCGTCGTCCGCGCAGCCCCAGAGGTACGAGGACAGGTGACAGCTCAGACGCCCTTCCCATCCCAGGTCCCTTCCCCCTCCCCCTTGCGGGCCGCGCTCCGCCTCGGACGCGGGCGCAAGGTCGCGCGGGACTTTTCCCGCCTGCGGCTCGACTTCGGGGCGCAGGGCCTGCGCCTCGACGTGGCGGATCTCGGGCTCGGCGGGCGCTGGGTGAGCATCGCCTTCAAGGACGAGAATCACGGTGCCTTCAGCCGGGTCGAGCTGACGGCGATCGTCGACGGGCCGGAGGGGCCGCAGGGCACCGGCCTGTCCGAGCGGGCCTTCGGCCACGGGCGCTTCACCTGGCTCGGGCGGCTGCCCGCCGGCACCACGGCCCTGACGCTCACGCCGATGCTCGGCGAGGCGGCCTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19873-19478 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCB01000025.1 Methylobacterium sp. 174MFSha1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19872 29 100.0 32 ............................. GGCATCGAGCAGGCCTCGCCGGAGGCGATCGC 19811 29 100.0 32 ............................. ACAAAAGAGTACTGGAAAGCCCCCGGTGAGGG 19750 29 100.0 32 ............................. TCGAGCCGCCTTCCGGCGTCTCGCCGCTACGC 19689 29 100.0 32 ............................. TACGTCAACGATCTGAAGCGCGAGGCGGCCGA 19628 29 100.0 32 ............................. TTGGTCGGGTGTGGACGTTCGACATCCAGGCG 19567 29 100.0 32 ............................. TGGGCGATCCCGGACCTCGCGCGCTCGGCGGC 19506 29 89.7 0 ..........................AAT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TCGGCGGCGCCGTCGCCGTGACGTGCGTCGCCATGGTATTGAGGGCGAACAAGGACAAGCACGAGGTGCCACCCCCGGCGCCTGGTACGGTGGGTGACGCCATGGTGCATCTGCAAGGGCCTGCCGAGGTGCTGACCATTCTGCGGGATCTGCGCGAGATCGGCCGGCAGCAGGTCGAGCACCTGGCGCGGATCGCGGAATGCGTCCGGGTCACGCGGGAAGAGGCGAGGGCCCAGACCGATCTCTTGCGCAACATCGACCGGGAGCAGGTCATCCATAACCGGACCGTTGACCGGCACGAGTAGCTCACCGGAACCTGCCCCACCGCTGGCCCGTTAGCCGGCGGATCTTCATGTGGACCCGAGACCCGCCTTCAGCCCCGCCGGCAGCCGCCGAGCGGGGCTTTTTCGTTCATCGGCCCGCCCGCGTCTGATCCCCGTTCAATCGGTAGATCCGTTGCACCTTGAAAAGCGTCGTGCCATGAAAAGCTTGTGAGAAGA # Right flank : CAGAAGCCCGCCCGGGTCACCCCGCGGCGGGCTTTTCTATGAACGAGCTCGGTCTCGCGCGATCGGGCCACGTACCCTCTCGCGCGCGATCCCGATCAGGCAGCGGAGCGAGCGGTCTCAAGAGAGGGGACTGCGCCGGTTGCCTCGTCGGCGTGACCGGTCCCGGCGCTCGGCGCGTTCCAGCGCAGAAGATCCCGCTTCGCGACCTCGACCAGGAGCGTGACCTCCCCCTCGTCCCCTTCCTCATCTCCTTCCTCGTCTCCTTGCCACAGGCTCCGGGGCAGCAGCGCATCCCCATCGGTCCAGCGGTGCAGGCCGCCCGAGGCAAGCGGCTCGACCGGGTAGAAGCCCCGGCCCAGGCGCGCGTCGTCGAGGCCGATCTCACGCCGGACGCCTCGCCCGCCGCACAGCGCCAGCCGCTTGAGATCGACGCCCAGCCGGCGCCCGTCCCGGCTGTCGCTCACCCCCGACGGCGTGCTCGCGAGGGAGCGCAGTCGCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60740-61507 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCB01000010.1 Methylobacterium sp. 174MFSha1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 60740 29 100.0 32 ............................. TGGATGCGGGAATTCCTGAAGTGGACCACCAA 60801 29 100.0 32 ............................. TGGGAGACCTGGACCAGCAGGTCCATGTGCCG 60862 29 93.1 32 ....A.........T.............. TCGTGCAGCGGGTTGACGGACAGCAGAACGTC 60923 29 100.0 32 ............................. CAAGCGGACGCCCTGGTCCTCTCCGAGATGGC 60984 29 100.0 32 ............................. GGCGATGCCTCGTACAGGGTCTCGGGCGAGTC 61045 29 100.0 32 ............................. CAAGCGGACGCCCTGGTCCTCTCCGAGATGGC 61106 29 100.0 32 ............................. GGCGATGCCTCGTACAGGGTCTCGGGCGAGTC 61167 29 100.0 32 ............................. GGCTCGGCCCGCGACCGCCTGAAGGAGGTAAT 61228 29 100.0 32 ............................. TACAATCAGGTCCGGCGCCTCGCAAAGATCGC 61289 29 96.6 32 ......................C...... TCGCCGCTGATGGCCGCGATGCTGTGGGAAGA 61350 29 89.7 40 ........T..............C.C... CTCGTCCCCAGACCTGGACACGCTCCCACACGATGGCGCC 61419 28 72.4 32 ........-G.G.CT.C......C.A... GGCACGACCATCTCGGTCAAGCTCTCGACCTG 61479 29 72.4 0 .........G.G.CTC.......CAA... | ========== ====== ====== ====== ============================= ======================================== ================== 13 29 94.2 33 GGCTCCCCCACACGCGTGGGGATTGTCCC # Left flank : GTCCGCCGCACCGGCCTGGCCAATCGCTCGAAAGAGCGTCCGGGTGAGCACGATGCGTTCGGCGTCGCCGTGCGGGGTCTGCCGCGAGAAGAGTGGCCAAGTCGTGATGAGGTGTATCTCGGCTTCGCGAGAGAGAAGCTCGAGGCGAGCGGCGCCATAGCCTTGTCGCGCCTGTCCCTTGCAGCCTCAACCCGCACCGAGGTCGCGCGTAGCCGTCACGACGGCGGTGCGCCGCGCAAGCGCATCGACGGTCCGGATGTGACCGTGATGGGGCGCTTCTCGGTGCAGGATCCGGAGGGTTTTGCGGAACTCCTGACTCGGGGCGTTGGTCGCCATCGCGCCTTCGGCTTCGGTATGCTCCTTCTCAAGCCTCCGGGGCGGTGATCTAAAGGAAGTAGGTTCTAGGTCGGTCTGTACGCTATCGTGATCCACGAAGCGACCGTACGCCTACTCTCTCGCTATTTGAAATTGTTAAAAAAATCAACAACTTGCCTGGAAGA # Right flank : CATCGAACAGCAGTCCATTGATTACGTTGTGTAGGCTCCCCGTACTGCGGGGATTGACCCTTGTAGAGCCCGCGGGCATTCGCGAACTCTGAGACTTCCCCCGCATGCGCGGGGATGGACCCATGGCGCAAGATTACGTCATCAACTACACCCTAGATCCCCTGCATGTGCGGGGATTGACCTTGCACGGGGTCCTGTTTGCTAGTGATCCACCCGGTTCCCCATACGCGTGAGGATCGTCCCGCCCCTACACCCTGATCGACGTCACGTTGCAGGCTCCCCCGCACCCTCGGGGATCGACCCCGGGCGAGCTTCGAGTGCGAGAAGGCTCGATAGCTCCCCCGCGCCTGCGGGGATCGACCCCGGCGCTTGATGTCGCCTGTGTCGATTGTCACGGCTCCCCCGCTCCTGCGGGGATCGACCCAAGCGGAACGAGCGCGACGAAGCGGAGGAGAGGGCTCCCCCGCGCGTGCGGGGATCGACCCGGCCGCGCCCTCTGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCACACGCGTGGGGATTGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 61598-63879 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPCB01000010.1 Methylobacterium sp. 174MFSha1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================== ================== 61598 29 75.9 32 A.A........ATGC........G..... ATGGCGCAAGATTACGTCATCAACTACACCCT CT [61601] 61661 29 72.4 91 A.A.....T..ATG.........T....T TGCACGGGGTCCTGTTTGCTAGTGATCCACCCGGTTCCCCATACGCGTGAGGATCGTCCCGCCCCTACACCCTGATCGACGTCACGTTGCA 61781 29 89.7 31 ...........A..CT............. CGGGCGAGCTTCGAGTGCGAGAAGGCTCGAT 61841 29 96.6 32 A............................ CGGCGCTTGATGTCGCCTGTGTCGATTGTCAC 61902 29 96.6 32 ...........T................. AAGCGGAACGAGCGCGACGAAGCGGAGGAGAG 61963 29 96.6 32 .............G............... GGCCGCGCCCTCTGTCCGTCCTGCCATGGCCG 62024 29 96.6 32 ..............C.............. CACGTCGACGCGCGGGCCGGCAAGACGGTGAA 62085 29 93.1 32 ..........T.................T GGCGCGGAACCCTGCCTGATCGTCCTGCCGCC 62146 29 96.6 32 ..............C.............. TGGTTAGTCTGCATCAGGGCCACATCGCTCTG 62207 29 96.6 32 ...............C............. TTCGATCCGAATGGCAAGACATCGCTGGGTGC 62268 29 96.6 32 ................T............ GACGCTCCAATCCATGCTGCCTTCTGGGCTAA 62329 29 96.6 32 .........................G... AGGTTGGCCTGGCTGATCACGGAGCGCGACAG 62390 29 89.7 32 ...........CTG............... ACTCTCCAGCCACTTGGCTATCTTGCGTCGCG 62451 29 86.2 32 ...........ATGC.............. ATCCCGGAGACCGGCCGCTGGGTGGTGATGCC 62512 29 82.8 32 A.T.....T....GC.............. GAGCACGAGGAGCATTGGCGCCAGCAGGAGCG 62573 29 96.6 32 ..............C.............. ACCCAGATCAACGGCGGTGCCATCGCGGCCAA 62634 29 100.0 32 ............................. AACCTCGGCAACGCGGCATCGAGCTACGGCAC 62695 29 96.6 32 ..............C.............. CACTGGCGGAGCACGATGGTAGCGACGTTGAC 62756 28 89.7 33 ......T.....A............-... CCCCTTCACCCCAGGAGAAAGACCCCATGACGA 62817 29 96.6 32 ..............C.............. GGCATCGTCAAGGCGTATTGGGACGCCACGTC 62878 29 96.6 32 ................T............ GCCGAGTACGCCAACCCGGCGAACTGGTAGCG 62939 29 96.6 32 ............................T TGCACCTGGGTCGTCGTCCGGGCCGAGTTCAA 63000 29 100.0 32 ............................. TCGAAATAGCGCGAGCCGCCGATTTCGATCCT 63061 29 96.6 32 ...........................T. TCCTTGCGGCCCCAGCCCCGGTGGTAGAAGAA 63122 28 86.2 32 ....T........-...A.....T..... AAGGATCCGGTGACCAACCTCTACAAGGAGTA 63182 29 86.2 31 ....TT..........T.......A.... ATCGAGCAGCAGTCCATCGATTATGTCGTGT 63242 28 75.9 33 A.GCT......A.-.........T..... TTATAGAGCCCGCGGGCGTTCGCGAACTCAGAG 63303 29 69.0 32 ACT........ATGC........G.G... ATGGCGCAAGAGTACGTCATCAACTGCACCTT 63364 28 72.4 32 A.A.......TATA...-.....T..... ATCGGCCGGATCAGCGAGGCCCTTTGGGGCTT 63424 29 100.0 32 ............................. CACGAGTACGTGTTCAATGCCGGCTACATCGA 63485 29 96.6 32 ...........A................. AAGGATTTCGCTGGTATTGTGCAGGCGTCCGG 63546 29 96.6 32 ............T................ GGCAGCGAGCCCGGCATCGCGAGCCCAGCGAT 63607 29 100.0 32 ............................. AAGACGCTGGGCACCAAGCTGAAGCCCGACCC 63668 29 96.6 32 ...........T................. GGGCCGGGCGTGATCGACGCCGACTACCGGGG 63729 29 93.1 32 .......T.....A............... TTCGATCCGAATGGCAAGGCATCGCTGGGTGC 63790 29 96.6 32 ................T............ GACGCTCCAGTTCACACTGCCTTCTGGGCTAA 63851 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================================================================== ================== 37 29 91.9 34 GGCTCCCCCGCGCCTGCGGGGATCGACCC # Left flank : GAGATGGCGGCTCCCCCACACGCGTGGGGATTGTCCCGGCGATGCCTCGTACAGGGTCTCGGGCGAGTCGGCTCCCCCACACGCGTGGGGATTGTCCCGGCTCGGCCCGCGACCGCCTGAAGGAGGTAATGGCTCCCCCACACGCGTGGGGATTGTCCCTACAATCAGGTCCGGCGCCTCGCAAAGATCGCGGCTCCCCCACACGCGTGGGGACTGTCCCTCGCCGCTGATGGCCGCGATGCTGTGGGAAGAGGCTCCCCTACACGCGTGGGGATCGCCCCCTCGTCCCCAGACCTGGACACGCTCCCACACGATGGCGCCGGCTCCCCGCGCCTGCGGGGATCGACCCGGCACGACCATCTCGGTCAAGCTCTCGACCTGGGCTCCCCCGCGCCTCTGGGGATCAACCCATCGAACAGCAGTCCATTGATTACGTTGTGTAGGCTCCCCGTACTGCGGGGATTGACCCTTGTAGAGCCCGCGGGCATTCGCGAACTCTG # Right flank : CTCGAACTCGATCTTCTCGATGCCGAGCGGGATGGCTCCCCCACCTGCGTGGGGATCGTCTGAGGTCGATATGCGAAAGCTTGTCCCGCAGTCCGGCGGCCCCTCCAAGCCATCCGAGAATCCTCCGAGCCGGTGTACCAGGGGATCGGCTCCACGATGTTGAAGTTCTGGGCGTCGTCGAGGAAGCCCGCCAGGAGGTGATGCGGCCGGTGTCGTAGTCGATATCATCGAGGGGTCGACGCGATCGGGGTTGTCGTCCTCGATCGCGCCCAAGGTCTCGACGGTCCCGCCACACCGCCGGATGCAGGATCAAGCCGCCATCAGGTATTCAACCTCCTCGGCCGTCCGGATGGCGGGGAAGGCCTCGTCGAGGTCGGCAAACTCGGCCGCCGCCTCCGCCGCGTTCTTGCGTAGCCGGACCCAAATCGCGTCTTGGGCGTCCGATCCCAGGCCAACCAAGTGGAGGGCGGCCTTGAAGTCGTGGCCGATCGGCGGCGTGA # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCGCCTGCGGGGATCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [20-48] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //