Array 1 1324872-1325560 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXR01000001.1 Corynebacterium ulcerans strain NCTC8666, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1324872 36 100.0 37 .................................... TCCATCCCCGGAACACATCGGGTTGACGTGCCAGATT 1324945 36 100.0 36 .................................... TTGCGAGGCGAACATCAATCGCCCGATCCGCGTTGT 1325017 36 100.0 37 .................................... CATGCGAGAACCACATCCTCACCCAGTAGGCGGGGGT 1325090 36 100.0 37 .................................... GGCGACTTCGACCGCAATTTCTTCCGCACCGAGGCAG 1325163 36 100.0 36 .................................... TGCGTCTTTTTGCTCTCGCCACTTTCTTATGGCTTC 1325235 36 100.0 36 .................................... GCATTCGACTTCAACGCCTTCAACCGCGCCATGGGA 1325307 36 100.0 36 .................................... CCACATGCGCGCCTTATCGCCCTTCTTACGGGGCAC 1325379 36 100.0 38 .................................... CTTCCTGCCAATTGGCACACGGTACAGGCAAGTCCATT 1325453 36 100.0 36 .................................... CCGTGACCATGGCCCTACATGGTGGTCAAATCCCCA 1325525 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 10 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AGATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCGAAGACCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCATTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGACTGCTGTCGAAGGTAGACACCACGTTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCAGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTATGGTTTTCATAGAGCAACAACAATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCCATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : TGACGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGCACGGGCTCATAGCCGTGCTTTCTCCCCAGCTGGTACTGGGTGATAAGCGAGCGTCAGGTAGTTGGAGCTGCCTGGCGCTCATTCATTTTTCAATGTCACCACACACCCCTACGGGGCATGTACGCACTTCGGATACACGACTCGCATTTGCATTGTTCAACGCCACAGAACGATCTATCCAGTCCATCGCCTAGGGCCAGCAGCTAGTACTGCTTTATTTCCGTAGACTGCCCAATATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGATTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGCCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCTCGCTAAAAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 1401315-1401771 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXR01000001.1 Corynebacterium ulcerans strain NCTC8666, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1401315 29 100.0 32 ............................. AGCCGATGGGAGAGTCCTTCGGCTGTCCAACC 1401376 29 100.0 32 ............................. TTTTAGCCCTGCCATTAATCTATACCTCCGCG 1401437 29 100.0 32 ............................. GCGCGTTAAGGGGGTATCCCCACCGACCCACG 1401498 29 100.0 32 ............................. CCTCAGCCACTTACTTCCCACCAACTAACCAC 1401559 29 100.0 32 ............................. GAGTATGGCGCGGTCCCGGGTGCCGATTTTGA 1401620 29 100.0 32 ............................. CGGCCGCGTAATCACCCGCACGAACTGTGACC 1401681 29 100.0 32 ............................. CGACTACATCGCCAAATTCGGTTTCAGCTTCC 1401743 29 96.6 0 ..........................C.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : ACATTATGATGGAGATCCTCACTCCGCATCTCCCCGAGCGTACCGACGACCGCCTCATCGGCGGAAGAAACCACGAAGTCCCAGGGCACACACAATATGGTGGTAAATAAATGTTTGCGGTCATCCAAGGACATAACCTTCCGAACCACCTCAACGGCTACCTCAGTCGCTTCTTTTCAGAAGTAGACGCAGGTCTTTATGTAGGAGTTCTATCCAGAGCCGTTATGGAAAACCTTTGGGAAAAATGCCAATCCATAGACCTAGCAGGATCCCTTACTCTGATTCACCCGCAATATGATGCTGAGCAAGGGTTCAGAATCCGCACAACAGGAAAACAACGGCGCCCCGTCGTTGATATTGATGGCCTTTTCCTCTCTGCTCGTGGTCTAATAGAAGACGTGCGTTTTGCTGACCCCCTGGATGAAGCCGATGCAATTATTCCAGACGAAGTTTTGGAGGATTTTTGCCCGGAGAGTGAGTAAACGCGCAGGTTATTTAGT # Right flank : CCTATATGTAAACGGGAAGGGGACGCACGTTAATTCCATCGCTATGGCTTATAATGTGGGAGGGCAGTTGACGAATGCCTGTGTCGATAAATTTGAGGTCACATATCGGGAGAATGGCCAAAGCAAGGCCATGACCTCGGGACATAATTGCGCGCTGTACCGTACCACCCATACTTTTCAGGTAAATAGGAATTTTGACCCTAATTCACGGGTCTGTGGACGAGCGCACGTGCAAGGTGCGGGTCCAGGAAACTGGGCTTGCATTACGATTAAGCCCTAGGAGGGTAGATGGTAGAATTTCTGACTATAATTGGCAGCTTTAGTATCGCTTTTCTGATCCCTACCTTACTTGTGATCATAATCGTGCTTTTTGTTCTGTCACTCAAGAAAAAGAAGTAAACCTTCTCCGTTTTGAATGTTGGTCAGCGCTATTTCGGTAGATGCCATCCAACATTCTTTTAGTTTTGAGCGTTTATCGACTGCTTGTTTCCCAGCCTATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 2002429-2000509 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXR01000001.1 Corynebacterium ulcerans strain NCTC8666, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2002428 29 100.0 32 ............................. CCCGGTTGTGGAGGCGCAGTTCACGGGTAATG 2002367 29 100.0 32 ............................. AGCGGCGATAACACTCGAAGCTAAGGATACAA 2002306 29 100.0 32 ............................. ATCACGAGCCAAGATCACCGCCCTACCGAACC 2002245 29 100.0 32 ............................. AACGGGGGTAACCCCTAGGCCGTGGTATGTGC 2002184 29 100.0 32 ............................. TCGGCAGCGAGCTTCGACCGCTCCCCTTCGAG 2002123 29 100.0 32 ............................. TGCGCCGCAAGCTCCTTATGAGCGCGCTTAAA 2002062 29 100.0 32 ............................. TACCACATTCGAAAAGCCCACGAGCCAGGACG 2002001 29 100.0 32 ............................. CAGCGGTTTTGTAGCAATTTTTTAATAACGTT 2001940 29 100.0 32 ............................. AAAACTGCTGCTCAACCCCGCCGCCTCCGCAA 2001879 29 100.0 32 ............................. CGATCCCTAGCTATGAGCGGTTTTTTAACATC 2001818 29 100.0 32 ............................. AGCCCCCACATATCCATTGACGTAGGCTTCAT 2001757 29 100.0 32 ............................. CCCCAGCACCGCGTGGGTGTGGGGGTTGCAGA 2001696 29 100.0 32 ............................. CGGGGCACTGCCCTTGTATGCGACGCGGGGGA 2001635 29 100.0 32 ............................. CTAACCATGTGAAGGTGGTGATCGAATGAGTG 2001574 29 100.0 32 ............................. TTGTGGGGCCTGCAGGGATCCGTGAAACTCGA 2001513 29 100.0 32 ............................. CGTAGAAATGCCGGGACTATTCGGCAATGAAT 2001452 29 100.0 32 ............................. CACTTTGTCTAGCAATGTCAAGGCGTGGGTAG 2001391 29 100.0 32 ............................. GTCTGTGCACGTCGTGAAGTTCAAGGTGTACG 2001330 29 100.0 32 ............................. TACCGGACGCACCGCAGAAACCTCGCAACCGA 2001269 29 100.0 32 ............................. ATCGGCAAAGGCGTAGGAAAGGGACGCAGCGG 2001208 29 100.0 32 ............................. GGGTAGGCATCATGCCCACCAGTCGGCTGCTT 2001147 29 100.0 32 ............................. GGATGTGGCCTCCTTCTCCGCGATAGCGGAGG 2001086 29 100.0 32 ............................. ACGTCAAGTCTTCCCATTACCTGAATTCGCTC 2001025 29 100.0 32 ............................. CAAAGGCCCCCACAATGTGGAGGCCTTCTCAC 2000964 29 100.0 32 ............................. TGAGCATCCGCCGCAGCACTCGACGCCTCATT 2000903 29 100.0 32 ............................. ACCGCTGTGGTGCTTAAAGATGGGCGCCGTTG 2000842 29 100.0 32 ............................. ATATTTGCGGTATTGATCTTTTGCCGTGGCAG 2000781 29 100.0 32 ............................. ATGTCTTTATCCTTATGTAGTGGGTGGGTTTT 2000720 29 100.0 32 ............................. CGCTGCCAACAGCATCGAGCTGATATGGGTCG 2000659 29 100.0 32 ............................. CAAGTCATTCCGCGTTTTGATTTGCCTCGCCT 2000598 29 100.0 32 ............................. GACTTGCACGCTGACGCTTACCGGTTTGCGAT 2000537 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : GAACACCGCCAACCCCAGAAACCCTCGAAACTGCGACTGCTCAACATCAAGGATCTGCACACCGTTGGCAGCTAACACACGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTTGCACGACGCACCTCGATTCCTCCCAGTACTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGGATGCGCACTTTATCCTCTTCCTACGGATCGAATCGCCTTATCTTTCGACCTTGTGGTTCTATGCCTTCCCTTGGATATTGCGGGGGTATGCAATAGTCTTTCCCACTTTTGTCATGGTCTAATAAGGGAGGCTAGTTTTCTCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGCGAGTAAACGCGCAGGTAAGTTAGT # Right flank : TAGCTTGACACTTGCTAGATATATAGTTTGTGTCCACCACTACGGAGGTATAAATGTCTATCACGCCAGAACGGGTTATGCAGCTTTTAGGTGAAGGTATGACCCAATCCCAGATTGCTAGGGAATACGGGGTTACCCGTCAATACATCTTCACTCTTGCAAAAAGAGGAGGGCATGAAGCTAGGGAAATGGAATACATCAAAGATGACATACCTTGGCCAAAAGTTAAAGATAAGCACCGCGATAACACAATCTATAAAACGCTACGAATCCACGCCCGCTATATGGAACGGGGACAAGAGGGGGTACGTGGTTCAAGTTATGTTAAACTGCTCGGCATGTATCGAAAACTTGTTCGATTCAATCAAGTTATCGACTACGACGAGTCCTACCCACCTGTAAAAGGTTTGTCGAATACAGGCGGGTTTATGTACGTCCCGAGGTCTCCAGAAGACGGGAACCTCATTATCAAGATGAAGCCCGGTGTGCGAATCACGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //