Array 1 5335-6155 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUE02000008.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0236 NODE_8_length_175546_cov_27.219777, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5335 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 5396 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 5457 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 5518 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 5579 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 5640 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 5701 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 5762 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 5823 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 5884 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 5945 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 6006 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 6067 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 6128 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22796-24473 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCUE02000008.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0236 NODE_8_length_175546_cov_27.219777, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22796 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 22857 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 22919 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 22980 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 23041 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 23102 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 23163 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 23224 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 23285 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 23346 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 23407 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 23468 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 23529 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 23590 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 23651 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 23712 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 23773 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 23834 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 23895 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 23956 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 24017 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 24078 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 24139 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 24200 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 24261 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 24322 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 24383 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 24444 29 93.1 0 A...........T................ | A [24470] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //