Array 1 802387-802598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047418.1 Ligilactobacillus saerimneri strain 1A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 802387 28 100.0 33 ............................ CATTGGCAAGCAAAGAAAATTAAATGATATTGA 802448 28 100.0 33 ............................ CGTGTTACCGCAATTAAGTGTTCCCCGTGTTGT 802509 28 100.0 34 ............................ TCATAAACCCGCAACAAGCGGCATAACATAACCG 802571 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 4 28 100.0 34 GTATTCCCCACATACGTGGGGGAATAAT # Left flank : CTAAGTACGTAGCTTCTAAGAATGGTAAAGTCGTTGACTTTGTTCGTTACGAAGTGGGCGAAGGTATCGAAAAGAAGGAAGAAGATTTCGCAGCTGAAGTCGCAGCCCAAATGAATATGTAATTCACTAGAAAACTAGTGTTTTATTGCTCATCCATATGTGTGTGGATGGGCTTTTTTAGTAATATTTTTGACGAAAAAGCTAGAATATTAACTTGATCTAGTGATGTCCACGAATTACTTTATAGAAAGAGTCAGACATACTTTGTAAACAAAACCTGACTGATACGAAAGTTGGACCAATAATCTGGAAGATTATTTAATCGTAGATTGTGTCCTGTATAAATTTTTGCTGATTTCATCAAATGTTTTATATGTATTGGTATAATAAAAATAAAGCTGAATTACAGCGTGGAAAATCTTACTTGAATTAAGTGTTTAAGTAATGATTTTTGATACTATTAATGTCTAGAAATGCTGTACTTACAGGGATATTTTACT # Right flank : TCTATTTATAGTTGTGTTGTATCTTAAAAAGAGTCTATAAAAGGATGGTGAGAAATTTGACTCGTGATGAACTTACTGATAGATTTCGTCTAGCTTTAAGGGTAAATGAAGAGTAAGAGTTTAAAATCGGCTCACATTATTGGTATTTAGGACCAACCTCTAGTAATCGCGGGTATAAGGATAAAAAAGCTTGGGTATTATATCAGTTCTATTCTGATGATATAACATATATTACTTCGGAAGATCCCGAGGTAATCATGAATATAGAAATTAAAGGAAGAACGTTATTAGAACACTTTATTGAATTTGAATTGAGTTAGGTAATTGGATCGCCTAGTCATGATGGGTAATGTGCTAATGATCATGATAAATGGAGAATGGTAAATTTTAGCTAAAGTGTTTATTGACGTCTTATATAGCATTCGTTATAATGTATAAGAACTGTTGATATTTATGCTATTTTTTGCATTTATAACGGTTACATTTAAGCTCGGAGGGAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATACGTGGGGGAATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1292885-1292061 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047418.1 Ligilactobacillus saerimneri strain 1A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1292884 29 96.6 32 ............................C AACCTTGTATGCCGTGCTCTCCGCTCTTTCTT 1292823 29 100.0 32 ............................. TGAAGCAAAAGATTAATCGGGTTTACCGTCGG 1292762 29 100.0 32 ............................. GGTTAGGTGAAAATAAAACATCTATAAAAGAC 1292701 29 100.0 32 ............................. AAAAATCACTCCCTACTGCCTCTCATAAGGCG 1292640 29 96.6 32 ............................C CGATTTTATCTGCCAACTCATTTGCTTTGAGA 1292579 29 100.0 32 ............................. GTGTAGCATGCAAGGCGGCGGGGAAGGTTAGC 1292518 29 100.0 32 ............................. TGGATGACATTGTTAATATTGATATGTCTGAT 1292457 29 96.6 32 ............................C GACTCAGAAGGGGAAAAGGATTTTGTGAAATT 1292396 29 100.0 33 ............................. GTGTGTGCTCCAAGCCTAACCGCTCTTGCATAA 1292334 29 96.6 33 ............................C TATGACCATCAACAACAACACGCTTTTCAATTA 1292272 29 96.6 32 ............................C TATATCAAGAGTTGCCTGGACGGTTTGAACGG 1292211 29 100.0 32 ............................. CATCTTTAAAATGAATTCAAAGATAACCACCC 1292150 29 96.6 32 ............................C AAGCCTTACGCAAGGGCGCAATTTTACGGGGT 1292089 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTATTCCCCACATACGTGGGGGTGATCCT # Left flank : TCCGAAAAAGATGAAATTATTTCAATTGGTGCTGTCAAACGAGGAAAAACGGGGAAAAAAGAATCGTTTTTTCATATAATTGAATGTTCAAAAGTTATCCCGCCGGCTATACAGAAGTTAACAGGGTTAACAAATGAAATAGTTGAAGCGGGAGAACCATTAGTAAAAGTTTTACGGGCATTTAGAAATTTTATTGGTGACGAAAGAATTGTAGGGTATAATTTGCGCTTTGATATCGAGTTTCTAGATTATGCTTTCAAGAAAGTAAAGTTAGAAAGAAAAAGTAACGAATTAGTAGATTTGCTAGCAATAGTAAAAAATAAAAATCGCTTTCTAGATAACTATAAATTGGACACTGTACTTCAAGCATATGGGATAGAAAATAAGCAGCCACATCAAGCACTTGAGGATGCTAAAGCAACATTTCAACTTGCAGAGAAACTAATGGAAAATTGATGTTGGTCAGAAGTGAAATGTTGATTTATAAGGGATCTGTTACT # Right flank : GGCAGAGAGCCAATCGAGAAAGAATTAGAATTTATTAAAAAGGTGATGAAATAGGATGAATAGGTTAGATAAAATAAGTGATTTAATTGAGTCAATGGAAACTCAAATGGAGATTACATTTAACTATGATAATGTTCCTTATTTTTTAGAACCGGACTATATAGATAATTTTAATATAAAGGGTTGGATTCTTAATAACAATAAAAACTTCAGTAGACAGAAAATTTCTAGCACTGACTCTAAAGAAGTATTGCAGTTAGCATTATTGGAAGATGGGCAAAGCGTCCTTTCTCAATGGAAAAATTTAGATATGATAATTTATTGAAAAATTAGGTGAAATAGTATGGCAAGTTACGAACAAGTTGCTACTAAGATATTGAAATATTTTCCACACACGTGGGGGTGATTACTTTGAGTGAGCAAGAACAACGCATTGTTATCTTGCATAAATTAAGGCACATTGTCCTCGACAGTTGTGATCTTTCTTACTAACGCTATGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATACGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //