Array 1 10654-12996 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRKU01000006.1 Streptococcus thermophilus strain ATCC 19258 932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 10654 36 100.0 30 .................................... ATATACGGACTCATCTAGTGAAACTGGGTA 10720 36 100.0 30 .................................... GAATCTGTTAAAACATTGATTTTTTATATT 10786 36 100.0 30 .................................... TGTGCCAGCGTCATTCAAAGCAATTGCTGA 10852 36 100.0 30 .................................... CAAAGCTATCGAATATATCGCAGAGGCAAG 10918 36 100.0 30 .................................... TCTTTGTGATATAAATGAAAAAAAAGACTA 10984 36 100.0 30 .................................... CAAGCGTAAGTTTTACCGTTAGAACGTTCA 11050 36 100.0 29 .................................... GATAGCGCCTTTGAATATTAATGGTGTTC 11115 36 100.0 30 .................................... TAGACTTTACTAATTCTCAAGTAAATATAT 11181 36 100.0 30 .................................... TTCTTTCAGGTATGAAATTAGAAACACTTG 11247 36 100.0 30 .................................... TTTCACAGTCAACACATCTCCGACACGCTT 11313 36 100.0 30 .................................... ATGAGTTGGTAGATGTTAAAGCATCAACTG 11379 36 100.0 30 .................................... GTATATACAGAACTTGGAGTTTTAACGCCT 11445 36 100.0 30 .................................... CATACACCACCAGCAAAGTCTTTACCAATG 11511 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 11577 36 100.0 29 .................................... AGACCATGAAGGAAGGCGTTGACAAATTC 11642 36 100.0 30 .................................... AGAAATTCATGATAAGTGGTCTGAAACTTG 11708 36 100.0 30 .................................... AGTCAACTTACTATGTTAAAATAAGACAGG 11774 36 100.0 30 .................................... GACTTGAACCTGAATTAATCAAGGTAGCCA 11840 36 100.0 30 .................................... TGTACTCTATTGATTGCTTCATCTTTATTA 11906 36 100.0 31 .................................... CTTTCAAGATACTCATCAACCATTGATGTCA 11973 36 100.0 30 .................................... AAAAGGTGCGTATGAAACTCATCCCAGCGG 12039 36 100.0 30 .................................... CTATGTCTTTACTGTTCTTCCAAAACCACC 12105 36 100.0 30 .................................... TTTGTTTGCGTTCACTTAGTTTATACTGAG 12171 36 100.0 30 .................................... AATTTGTCATTGACATTTACCACCGTCCTG 12237 36 100.0 29 .................................... TGGCGCAATGGTTTTAAATCATATGCCTT 12302 36 100.0 30 .................................... CATGGCCTTGTATTTTCGAAAGAGCATAAG 12368 36 100.0 30 .................................... TATCCTCTCGTTGATAATATGCTTAATTCT 12434 36 100.0 30 .................................... TTGATAGACCAAAACACTTCTGTGAGCAGC 12500 36 100.0 30 .................................... TGCCTTTCTTCAAAGAAGCTATGCTTGTTA 12566 36 100.0 29 .................................... CTGCATCAAACGATGGCTTTGTCATCGGT 12631 36 100.0 30 .................................... AATATAATCGACGAGTAAGAGCGAGAGACG 12697 36 100.0 30 .................................... CGCGCACCGTTGACAAGTGTCAAGTTATCG 12763 36 100.0 30 .................................... GATGATTTTGAGTTTAAGGTTTTTAAACAA 12829 36 100.0 30 .................................... TCATACTAAAACTGGATAAACAATATTACA 12895 36 100.0 30 .................................... TGACACGGCTGGCAGTGTTTCGGTTGGTGG 12961 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACCTGCCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 44907-46396 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRKU01000038.1 Streptococcus thermophilus strain ATCC 19258 968, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 44907 36 100.0 30 .................................... AATACGTGAGTTTGGCACTCTTGACGTGGC 44973 36 100.0 30 .................................... CACAGTTGAGATACCGAATCCGAATAGCAT 45039 36 100.0 30 .................................... TTAATTCAACGATTTTACGAGCTTTCTTTT 45105 36 100.0 30 .................................... AGAAAGACTTCAACAGTCCAGAGAAAATAA 45171 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 45237 36 100.0 30 .................................... AACGACTGCACAGCGGCAGTATGGGTGAAT 45303 36 100.0 30 .................................... TGATGAAGTCAACATCACAGACACAGGGAA 45369 36 100.0 30 .................................... ACCTAACACACTTGTGTGTCCGTAGCTTCC 45435 36 100.0 30 .................................... GCCAAACAAAAACAGAAATGATGAAGCGGA 45501 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 45567 36 100.0 30 .................................... AAAATGGAATTCCTGTTGATATGGTTAACT 45633 36 100.0 30 .................................... CACTAGCAATGCCTTGCAAGGCTGCCCCAA 45699 36 100.0 30 .................................... CTTCAATTGAATTGAGTATCTCGAGATAAG 45765 36 100.0 30 .................................... TTATTAGTTTTGATATGCCACAAAATAATT 45831 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 45897 36 100.0 32 .................................... CTTAAGAGTTACCCTCTTAATGGTCTTAAGTA 45965 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 46031 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 46097 36 100.0 30 .................................... AACAGGTAGTAGATGGAATATTAAAGAAAT 46163 36 100.0 30 .................................... TTCATTTCTTCCTCAACCTCATACCCAAAC 46229 36 100.0 30 .................................... ACGTTCTTCGCTAGTTCTTCTAGCATAAGC 46295 36 100.0 30 .................................... ACATCTGGAACGGTAGCACCAACGAATGGT 46361 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 23 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATTTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //