Array 1 16200-16426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAUC01000023.1 Streptococcus equi subsp. zooepidemicus Sz5 contig000077, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 16200 32 100.0 33 ................................ GTCCCTCCTGTTTTATGATGTAAAAAAGCCTTT 16265 32 100.0 33 ................................ TTTTTGCTTGATCTCTGCATCACTTAAAAACTC 16330 32 100.0 33 ................................ AGCGCCTTTGTAAAGTGTATCAATACCGCCAAA 16395 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================= ================== 4 32 100.0 33 GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Left flank : TAAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAATAAAGAAATGGGAGGTTATAGCTAAATATGTTATTAGCTAGCCTGTGTCATTTTTCTATAAACTGTGCTATACTGCGCA # Right flank : TAGGATTATGCCTTTTTTTATCAAGGGGCGATACTGTCTCGCCCTTTGCGGGCGAGTGG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : NA // Array 1 293-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAUC01000024.1 Streptococcus equi subsp. zooepidemicus Sz5 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 292 30 100.0 36 .............................. TTGGTGCAAAACGTTATCATTTGGTTTATCAAAAAT 226 30 100.0 35 .............................. CCATAAGCACCATCTTTATCAACTCCCATGCCTAT 161 30 96.7 35 ........G..................... GACTTCGAGAACATGTTTAAGTGGGGCTATGCTAT 96 30 83.3 35 ................G.ATGG........ TGAAGCGCATGCTATCGTTGTTGATATGATCATAT 31 30 83.3 0 ................G.ATGG........ | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 92.7 36 TTCAATCCACTCGCCCATGAAAGGCGAGAC # Left flank : AAATACACCGGCAGAACTGGAAAGATACAAGGGGAAAAGAATGATAACAGCCCTGCAATGAAAACTGAAACCATCAAAAGCATCGTTAATTCCATAATAAACTCCTCTCTTAAGTTACCTCTATTCTACCTAAAGTAGGGCAGACAAACTATAGACAGTGACATGAAAAAACTTGAATTTGATACGATATGCCTGACTAGGCCATCAGCAAAATCCTATCAGCTACAGCAAACAAGGGCTCAGGAGCTATCAAGCACCAGTCTAGCTGAGATAATGTGCTTGTTCTTTTGAAAAGTCTGATCTGCAATCACAAGAAAAAACCAATCCTGTTGCAACAACCTCAGATTGGTTTTTATCTATTTGACATAGCACCATAAAAAGCTTAAATCAGCTTGATGAATACGATATAATTTATCCCTTCATGAAAAACAAAGAATACGGACCACGCACCCACAAAGGGCGAGACGGAGTCGCAACATCGTAAAGTCACGTATCGCATA # Right flank : CA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCACTCGCCCATGAAAGGCGAGAC # Alternate repeat : TTCAATCCACTCGCCCGTATGGGGCGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //