Array 1 26897-29265 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSGB01000037.1 Vibrio cholerae strain N2735 NODE_120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26897 28 100.0 32 ............................ GTTAAGCGTGAAGATGTGGAAGATGACCAGAT 26957 28 100.0 32 ............................ CAAACCAGCTCACTGCCTGTTAGCTCATACAC 27017 28 100.0 32 ............................ ATACTGAAGCAATGTGGGAGTTAAGTTAATGC 27077 28 100.0 32 ............................ AAAGAGACGCGCTTGAATGAAACCTTAAAACA 27137 28 100.0 32 ............................ TTCAGGCGTTATGTTTAAGTACCAATCGAACC 27197 28 100.0 32 ............................ AAACACGCACCACAGCCTTGAACGCGATCAAG 27257 28 100.0 32 ............................ AAGGCATTGGTGAAGTAGCACCTTATGCCAAA 27317 28 100.0 32 ............................ GGTTAGAATCGACTTGTCAATGATAACTAGCC 27377 28 100.0 32 ............................ AGTTATGTGACATGATAACCAGCTTTGTTAAG 27437 28 100.0 32 ............................ ATAATAAAAAGCCGGGTAAGGAGGATGTTTTA 27497 28 100.0 33 ............................ CTGATGTGTTAGAAGTAAAAGTTCCAGCATTTC 27558 28 100.0 32 ............................ AGATAAGCCGCGCAACTCCACAATTACACCTC 27618 28 100.0 32 ............................ TTGATACAGCAGATATAGATGATCAGATAAAA 27678 28 100.0 32 ............................ GATCCCACAAAGTCAGCCACAGAGATGACGAT 27738 28 100.0 32 ............................ ATGACGGAGCCGGGTATGCCGCATAGCTCAAG 27798 28 100.0 32 ............................ AGTTGTATGCAATAGCGATCAATGGCGGGTAC 27858 28 100.0 32 ............................ GATACGCCAAACAAGCAATGGGTAAACAAACG 27918 28 100.0 32 ............................ CTTCGCTGTAGCAGTAACGCAACCAATCAGAG 27978 28 100.0 32 ............................ AGCACAACCTCGTTCTCAGGCCCAGTATTCAG 28038 28 100.0 32 ............................ TGTAGCCGCTAACACATGGAAACCGTGGCTCT 28098 28 100.0 32 ............................ AGACGGCAAAGGCGGCACGGAGCATCGCTACG 28158 28 100.0 32 ............................ CTTAAGACAAGAATGGAGAACAAAGAATACCT 28218 28 100.0 32 ............................ TTAAAAATACTTCGTTTGGCTCTTTAACCATT 28278 28 100.0 32 ............................ AGCCGCAACAGACGGGCGAAAGATAACCCACG 28338 28 100.0 32 ............................ TTTAGTCTTTAGTGATTCCTGCTGCGGGACTC 28398 28 100.0 32 ............................ ATTGTAGGGATTGGTTTTGATAATTCCGCGAA 28458 28 100.0 32 ............................ AATCAATGAGCCAGTGAAAACCGAAACTGCAA 28518 28 100.0 32 ............................ CGTTCTTTGCTCGCCTCGCAACATGAAATACT 28578 28 100.0 32 ............................ AGCATGTAGACAAAAGCAAGCTTGAAGCTTTC 28638 28 96.4 32 ...........T................ TTCATGCGGCGAATAGCTTCAATAGCAATAGT 28698 28 96.4 32 ...........T................ TGCCATTTGCGCTTTAAGCTTTGCGATGTCGT 28758 28 96.4 32 ...........T................ GCGCTAAGTGGGCAATTAGAGATAAGCATGGC 28818 28 100.0 32 ............................ GGATAGGGCGTTAATGTGTGCTCAAGCCGCTT 28878 28 100.0 32 ............................ AGTAAAAACGCCCCCGCACAAGGCGGTTTCGG 28938 28 96.4 32 ....................T....... TCAAAAAATTGCACGCATGGCCACCGATACGG 28998 28 96.4 32 ...........T................ AAACAGATATAAGCGCATCGGGCTTTCACCCA 29058 28 100.0 32 ............................ TGAATGAAGAGTCAGGCGAGATTGATCTCAGC 29118 28 100.0 32 ............................ CGACGGAAACGGCGTGCGCTCAGTGCTCGTTT 29178 28 100.0 32 ............................ TTCAAATGGCTTTACCACTCTCACGGCTTCCT 29238 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCATGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAATCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //