Array 1 13797-14416 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSV01000018.1 Xanthomonas translucens pv. translucens strain UPB458 Xt_translucens_UP458_Contig_114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 13797 31 100.0 33 ............................... AGCTAGTGCCGCATGGCGCCGCACTATGCCCGA 13861 31 100.0 35 ............................... ACAACACCTGGCTGACGTACTCGGGTAACCGCCGG 13927 31 100.0 34 ............................... AACGGCCGGACTCCCATCATCATAGAACAGATAA 13992 31 100.0 35 ............................... GGTGACCAGGTGCGCGGCTTCGCGGAGAAGGCCAA 14058 31 100.0 35 ............................... GCGCAGACGGGCAAGCTGTCGTTCACCGACCTGGC 14124 31 100.0 33 ............................... GTCCCAAGCCTGCTGATTTCCAGACTGGCATTC 14188 31 100.0 35 ............................... TTGGGTGTGTCGGTCATGGTTGGACCTCAGGAAGG 14254 31 100.0 35 ............................... TTGGCCGGTGCTTTCTCGTTGGGCGCGCAGATCTT 14320 31 100.0 35 ............................... GACATCGAGGGGCCGGGCGTCTATACCGTTACGGT 14386 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 10 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : GTCTACGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1029-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSV01000047.1 Xanthomonas translucens pv. translucens strain UPB458 Xt_translucens_UP458_Contig_140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1028 31 100.0 34 ............................... TTCAAGTTTCCGCCGTAGCGAGGGGCCGTCTCAT 963 31 100.0 34 ............................... TCAAGTATCTGCACCCAGGCGAAGGGAGTTCCTG 898 31 100.0 34 ............................... GACAGTGCCCGCATTTGGTACTTCGACACTTCGC 833 31 100.0 35 ............................... CCCGCAGGGGCGTACGCTGCTGGCGGCCACGACCA 767 31 100.0 35 ............................... CAATGATATTGGATAGTACTAGCTACCGAGCATCC 701 31 100.0 36 ............................... ATATAGTGGGCGATGACCTTGGCGGACGTGTTGACC 634 31 100.0 35 ............................... CCCACCACACTGCCCAACGACAGTGCAGAGCGTAA 568 31 100.0 35 ............................... AATCGCTGTTGCCTGTACCGACTGTGCATTTGCTA 502 31 100.0 34 ............................... CCTGTGTTTACCTGTTAGCTACTGCGGAGGTGTT 437 31 100.0 36 ............................... CTCGCCAGGCCAGAGGGTGTCTAGCTGCGGGAGCCA 370 31 100.0 34 ............................... ACTATCTTGCGGTTAATCCCGTGGCCCAGCCACC 305 31 100.0 35 ............................... CAGTCACTGACAATGTCATCCATCGTGATGAAGTT 239 31 100.0 35 ............................... CTCACGCCCAGCAACGCGCCCCGTGCCGTTGGCGA 173 31 100.0 35 ............................... CTCCGTAAGGAATCCCATTTGCGTATTAAGTTCCA 107 31 100.0 36 ............................... TCCCAGATGCCGCAGCAGACCATACCGCTGTTTGGC 40 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 16 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGCTAGCG # Right flank : CGTCTACGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7657-4811 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSV01000309.1 Xanthomonas translucens pv. translucens strain UPB458 Xt_translucens_UP458_Contig_377, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 7656 31 100.0 34 ............................... CTCCTCCGTTCCCTTCGGGTTGTATCCTTCCAGG 7591 31 100.0 29 ............................... TCCGTCATCGGAATTCCTCGTTGTGTAGA 7531 31 100.0 35 ............................... AGGCTGTGGCTAAGGCAATCGGCACGCACGTGCAG 7465 31 100.0 35 ............................... TGCCCGTAGAGCCACCGCCACTCGCGTAAGGTGCG 7399 31 100.0 36 ............................... TGGAACAGGCTGAAACACCAAACCCGCATCAGGCTG 7332 31 100.0 33 ............................... TTCCACTTGCCGTGCTCCGGGTGGGTGTCGTCC 7268 31 100.0 34 ............................... CTGGTCACTGTCGTAGTCGCTTCGTCGTACGACC 7203 31 100.0 36 ............................... CGCACGCAAACAGTGCATGTCTAGCCCTAGCCGGAG 7136 31 100.0 36 ............................... TTACGCATCGTTAGTTCCTTCTTGTGCTATGGCGTC 7069 31 100.0 34 ............................... ATACGCAGTGCCGGGTCTAGAAGGATGTCGAATC 7004 31 100.0 34 ............................... ATCCCCGCGGCGCCGGCACCGGCACAGCCCGGGA 6939 31 100.0 35 ............................... TGGAGCTGCTTGCTGGCGATCGTCATCTGCTGGGC 6873 31 100.0 35 ............................... TTGCTGTCCTTGGCGAACCGCTTGGTGCCGTCCTC 6807 31 100.0 34 ............................... TCGATCAGCCGACCATAGCGCGGCGTCTGGATCG 6742 31 100.0 34 ............................... ACCGTAACCGTCAAGACAGCTGCCGGTACCGGTG 6677 31 100.0 35 ............................... CAAGACGCGCTCGCGCGTATCTATTTCCTGACCCG 6611 31 100.0 34 ............................... AGCCACCTTGTCCGGACTCGCCCAGATCGAGTTG 6546 31 100.0 33 ............................... CCGACGTGCGCAACGACGACGCAGTCGATGGTA 6482 31 100.0 36 ............................... GGGTTCGTGCTACCCGGCGTAGCGATCAACTGCCGG 6415 31 100.0 34 ............................... TCAGATTAGGCGCAGGATGCGCGAAACAAAGGTA 6350 31 100.0 35 ............................... AGCGTCAACGTGGCCCACGCGCGCATGCTGCGCGA 6284 31 100.0 34 ............................... TGCAGCAGCTTGAGGAGCGCTTGCAGCGGTTCGC 6219 31 100.0 33 ............................... TCGCGATTGTCACCGGTGGTGGCAAGTCGCTGG 6155 31 100.0 36 ............................... GGGTTGGTCGGAGTGGCGGTTTTGAGGGCCGGCGAG 6088 31 100.0 35 ............................... CTGGCGCAGGTCGCGCACGAGTCGGACAACTTCCG 6022 31 100.0 35 ............................... CACAATGTACTGACAGGACCGGCCGAAACACGTTT 5956 31 100.0 36 ............................... CGGTCGGTGCTGCTGCTGCTGCGATGGGGGGCGCAG 5889 31 100.0 36 ............................... GTCTCACCCGGCAACAACGGCGTCGCTGATCGCATC 5822 31 100.0 33 ............................... TTCGCCCGGGCCAAGAGCGCGGAGGCGGCCCTC 5758 31 100.0 34 ............................... GACAGCAAGCCGCCGTTCTTGCGCATGCGCCTGC 5693 31 100.0 35 ............................... GCTGCGCTGACACTGGAAGCGCGCAACGCCGAGCG 5627 31 100.0 33 ............................... ACCACGGCAAAGCCGGCGAGCCGATGACAACTG 5563 31 100.0 35 ............................... GTAATACCACACAAGTCAGCGCGGCGCCGGCAGAA 5497 31 100.0 34 ............................... TTTTGCACAGGGCGACAGCTTCCGCTTAGACATC 5432 31 100.0 35 ............................... AAGATCAACATCCCCGGTGCCAGCACAGAAGTGCG 5366 31 96.8 35 T.............................. TCTGTCGAAGGCATGCTCACGGCTGCGCTGACTTC 5300 31 100.0 34 ............................... TACAACAAGCTGCTGAATATCGCCGGCATGGGGC 5235 31 100.0 34 ............................... CCGGATGGGCGCACTTGGGGCTACGACGTGGTGA 5170 31 100.0 34 ............................... GTACGCCTGCCGGAACCTCGGAAATTCCACGCCG 5105 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 5040 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 4975 31 100.0 35 ............................... TCGACCCAGGAGCCGAACGATGCGCTCGAGAGCCG 4909 31 90.3 33 ...............T....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 4845 31 93.5 0 ...............C.........C..... | G,G,G,T [4815,4835,4837,4841] ========== ====== ====== ====== =============================== ==================================== ================== 44 31 99.5 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TTGAAACTAAACAGCATCGCCGGGGCGGCTATGGCGCAGTTCA # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGAGGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCAGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 236-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWSV01000543.1 Xanthomonas translucens pv. translucens strain UPB458 Xt_translucens_UP458_Contig_588, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 235 31 100.0 33 ............................... GCACAAAGGCCGCCCGCGACGGTGTAACTGACC 171 31 100.0 34 ............................... CTCATGGAGAGTAAGGCGGCGCTGGATGCCTTGC 106 31 100.0 35 ............................... TGAATGGTAACGGCACCGGCCAAAACCTGCTGGGT 40 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TTGAAACTAAACAGCATCGCCGGGGCGGCTATGGCGCAG # Right flank : CTAAACAGCA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //