Array 1 37-664 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAEQ01000069.1 Campylobacter coli strain MON299 1009600069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37 36 100.0 30 .................................... CACTGGCAGATGGGATTTTATAGAAATCAA 103 36 100.0 30 .................................... TAAGCACCTACGATTGGGGTAGTTTTGTAA 169 36 100.0 30 .................................... AACTTCTGAAATATTTACATCAGTTCCAAG 235 36 100.0 29 .................................... AGCAAAAATCTTGGAGAATTTGGAGTAAA 300 36 100.0 30 .................................... CAGTTTAGCGGTGGTGCTTTGATTGAAGTT 366 36 100.0 29 .................................... CCAAATATCAGTATAACTCCAATCAATAA 431 36 100.0 30 .................................... ATTAAATCTATACCAGCAGAAGCAATAGAA 497 36 100.0 30 .................................... TATGTCAAAGAATACATTTATAAAAGCAAT 563 36 100.0 30 .................................... ATAACTTCTCTATATTTGTCTAGCTCAGGT 629 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : ATAAAATTATATCATCTAATTTAGCATAGTTTGGTTG # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTACATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCGTATTCAAAAAGAACTAAATTTTTATCATCATTCATTTTTTCATTAAAAGTAACTCCACCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCGGTTATGGTTAATACTCTTATATTGCCACAAGGAGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTACAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 26425-26593 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAEQ01000068.1 Campylobacter coli strain MON299 1009600068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 26425 36 83.3 30 AACCG.T............................. TAAAAGGATTTTGCTTTGTGATTGGGAGGG 26491 36 100.0 31 .................................... ATATTAGACATTTATGCAAAAAAAATGTATA 26558 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 94.4 31 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TTATATCCTGCTCATCTTTCACTTGCTAAGTCTTAATCATAAGCTTAAAAATGATTATTTTGCTAGAGTTGCCATAAACTGCGTGGCATTATTTATTTTTATTTATGCGGGGGTTAATATTTCGATGACTATAGGTTTTGCACCGGTTGTCGGTATACCACTGCCTTTTTTTAGTTATGGTGGAAGTTCTTTTACAATTTTTATGATTTTCTTTGGAATTTTACAACATTTAATCACTTTTAGATATTTTTGGACAGATAATAAAAATAAATAAAATAACTTTAAGCAAAGATAAGATATAATTCTATCTTCACAAATCAAAGGCGGATTTATAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTTGGTCGCAGGTTCGAGTCCTGCTAAATCCACCACTACTTTAGTTGTAGATATCTAATCCCAAAAAATGATTCAAATTAACTTTAACTACAAATAATCTATACCGTTTACTATCACCTTAAATTGAAATAGA # Right flank : TTTATTGATTTGAATTTCACATTGCTTGTGTTTTAGTCTCTTTTTAAAT # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //