Array 1 98023-100003 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHN01000009.1 Salmonella enterica strain BCW_5883 NODE_9_length_224063_cov_3.03428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 98023 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 98084 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 98145 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98206 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98267 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98328 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98389 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98450 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98511 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98572 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98633 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98694 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98755 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98816 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98877 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98938 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98999 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99060 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99121 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99182 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99243 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99304 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99365 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99426 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99488 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99549 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99610 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99671 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99732 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99793 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99854 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99915 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99976 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116136-117673 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHN01000009.1 Salmonella enterica strain BCW_5883 NODE_9_length_224063_cov_3.03428, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116136 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116197 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116258 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116319 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116380 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116442 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116503 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116564 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116625 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116686 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116747 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116808 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116869 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116930 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116991 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 117052 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 117113 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 117175 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 117236 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [117278] 117278 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117339 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117400 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117461 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117522 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117583 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117644 29 96.6 0 A............................ | A [117670] ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //