Array 1 11119-12122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUN01000060.1 Citrobacter rodentium strain ATCC 51459 Contig60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11119 29 96.6 32 ...........................G. GACTCTAACGCACTCAATCCACTTAATCCCAG 11180 29 96.6 32 ...........................G. AAACCACTGTAACCGCCTTCTAAGCGGTTTGC 11241 29 100.0 32 ............................. TCATTCCGGCGCACCAACTGGAATTGCTGGAA 11302 29 100.0 32 ............................. TAATAAACAAAAATCAACGCATCCTGGTGGCA 11363 29 100.0 32 ............................. CAGCTGGCAAGAACAAAATCGACTGGAGCGAC 11424 29 100.0 32 ............................. TTTCGGTGCCGGAATGACGTGTGAGCGTATTT 11485 29 100.0 32 ............................. ATCTGTTTATAGCTGGCTATAAAATTTATAAA 11546 29 100.0 32 ............................. TGGAAACGAACACCGCAGGGGTACGTGATTAC 11607 29 100.0 32 ............................. ACTACGGTTGATTTATAAGAGCTACCATCCGG 11668 29 100.0 32 ............................. TACGCGACATGTATTTTTTGCCGTGTTTCATG 11729 29 100.0 32 ............................. TTCATGGGGGGTCACGACCCAGCCGCCCAGCT 11790 29 100.0 32 ............................. TACCCCATTCAATACGGGCGATGCTGAATAGT 11851 29 96.6 32 ............G................ TTAATAGCTGAAACAGGTAAACTCAACCGCGA 11912 29 96.6 32 ............G................ GCGTAAACCCAGGGCTCGGCTTTTTTGTGAGT 11973 29 96.6 32 ............T................ CCATTATCGAACGCCGCGCTGAACTCGCTGAT 12034 29 96.6 32 .............T............... ACGCAACCATCATTGTTGCTGAGCACCACAAT 12095 28 79.3 0 .......T....AG...-....A.C.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTACACTGCCGTTATCTCTCACCGTTCTGGCGAAACTGAAGACGCGACCATCGCTGACCTGGCTGTTGGTACTGCTGCGGGCCAGATCAAAACCGGTTCTATGAGCCGTTCTGACCGCGTTGCTAAATACAACCAGCTGATTCGTATCGAAGAAGCGCTGGGTGAAAAAGCGCCGTACAACGGTCGTAAAGAGATCAAAGGTCAGGCGTAATCCTGTACTTTCGTTCTGATATAAAAACCCGCTTCGGCGGGTTTTTTGCTTTATATCATCCAGTGATTTTGACCCCGGTCGTTCTGTCTCGATCGTGAATTGAAATTTTCAATGGTGCGATAATCATCACACTGTTTTGGTAGATTTGAAGAAAGAATAGCTACCATCTTCTTTATCTTATTAAAATCAACAGATTAGTTGCTCTTTAAAAATGACTATTTGTAAGGATTAAGTTGGTAGAATGTTGTATTGATAGAAATTGCTTTATAAACAGTTGGTTGTATTTAGT # Right flank : GTAGTTTTGCCTGGCTATCTGCGATCTGCGATAATGCGCCCTCATAACCCCAGACAGAGACGATTATGCAGTACCCGATTAACGAGATGTTCCAGACCCTGCAAGGTGAAGGTTATTTCACCGGCGTCCCCGCCATTTTTATCCGTTTACAGGGATGCCCGGTTGGCTGTGCCTGGTGCGATACCAAACACACCTGGGATAAGCTTGAGGATCGGGAAGTCTCCCTGTTCAGCATCCTGGCGAAAACCAAAGAGAGTGATAAGTGGGGAGCGGCGAGCAGCGAAGATCTGCTGGCGGTAATCAATCGTCAGGGATATACCGCGCGTCATGTGGTGATTACCGGCGGCGAACCCTGCATCCACGATTTAATGCCGCTTACTGCGTTGCTGGAAAAAAACGGCTTCAGCTGCCAGATCGAAACCAGCGGTACCCATGAGGTGCGCTGTACGCCGAATACCTGGGTGACGGTATCTCCAAAAGTGAATATGCGTGGCGGCTAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6731-6276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUN01000123.1 Citrobacter rodentium strain ATCC 51459 Contig123, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6730 29 100.0 32 ............................. GAGTATGTTTAAACGTTTACTGGCGCGCCTGT 6669 29 100.0 32 ............................. TCATATGTTGCCGCGTTTCCAGACGTCATGTT 6608 29 100.0 32 ............................. TGTCGGATAATCCGCACTTTTTGGCGAATGAC 6547 29 82.8 32 GT.........AT...........A.... TATCGTTCCTTCGCGGATGTCGTCACGCAACA 6486 28 86.2 32 ...........A....-.......A.T.. GAAGGTGATGAAATTAATCAGCGCAAACTGGA 6426 29 89.7 32 ...........AG...........A.... ATATAGATAGCCATCAACAACACCGCTTGGAC 6365 29 96.6 32 ........................A.... GGGCAGACGTTTGCCCGCTGGATGTAGCTATT 6304 29 89.7 0 .............C..........A.T.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.1 32 AAGTTCCCCGCGCGAGCGGGGATAGACCG # Left flank : GTGCTATTAGCCGGTGAAATCGAGCCGCCGCAGCCCGCTCCGGATATGTTGCCCCCAGCGATACCAGAGCCGAAGCCGCTGGGGGATAACGGACATCGGGGACGTAGCGGATGAGCATGATGGTGGTTGTTACGGAAAATGTTCCTCCGCGTTTACGAGGGCGTCTTGCTATCTGGATGCTGGAAATTCGCGCTGGCGTTTATGTTGCAGATGTTTCGAAACGCATCCGGGAAATGATATGGCAGCAAGTCATTCAACTCGGTGGTGAGGGAAATGTTGTAATGGCATGGGCGACCAATACGGAGTCAGGTTTTGAATTTCAGACATGGGGTGAGAATCGTCGTATTCCCGTGGATTTGGATGGACTTCGTTTGGTCTCATTTCTTCCTGTTTAAAATCAAATAGTTGACTGATCTTTAAAAATGTGGATTTGTTGATTTTAAGTTGGTAGATTGTTGCCTTTGAAGAAAGTCTTTTAAAATCAGTCGGATATTTTTAGT # Right flank : GGCTAATAAGGGTGCCCGGCACATGACACAATTGTTTCTATATTGTACCCATTTTTACTATCATTTCTTATGCTTCAGTTATACTGGTATTAACCAGAGTCCACAGAAAACTGGAGAAGGGTAAAGCCAGATTTGCTCGTTGATGTAAGCTCTCTTTTTGGATTTCAGAGATATAATAATATTAGCAATAAAACTTCCGAGGAAAAACAATACGCCTGACATGTCGTAAGCCAGACCACCGTAACCTGCATTCCGGCTCTTAATGTAAAGCAATATCATGGCTGTGACGGGATAAAGCATCAGCAGCAACGTCAATAATATCTGTTTTTTTAAGCGCATTTCCCTTGCAGACATTACGCAAAATATAATAAACAGAAACAGCCTGCCTGAATACCTGTATCTACCCATAAAAAATGAAAAGTCCGAAAGCATAGACATGAGTTGTTTAATCGATAGCGTTGTTTTACCCTTCATAACGTGATTGCCGGAGGCAATCACGT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTCCCCGCGCGAGCGGGGATAGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //