Array 1 198154-196719 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMF01000002.1 Salmonella enterica subsp. enterica serovar Agoueve strain CFSAN059884 CFSAN059884_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 198153 29 100.0 32 ............................. CGTATCCGGAAATCACATTCAAGAAAAATCCG 198092 29 100.0 32 ............................. AAAGAGGGGGACGTGTCTGTCTCCTATGCGGC 198031 29 100.0 32 ............................. AGTTAATTGTAGTGCTTGAAGATGTCCGTAAT 197970 29 100.0 32 ............................. GGTATTAAAATGAACAAATCAGTAATCTTCTC 197909 29 96.6 33 ............................C GCCGCTGGGGCTGGTGGCGGCAGGGTTCACACC 197847 29 100.0 32 ............................. CACGCGCTGGCGACTCCTGCGCCCTAACTCCT 197786 29 100.0 32 ............................. GGAATCGTAAATGACCTTTATTAGAGATATCC 197725 29 100.0 32 ............................. CGTCACTGTTAAAATTCCCGGTATAAACCACC 197664 29 100.0 32 ............................. AGCTGTCGCTGTTGGAGTAAACCAGTGCGAAT 197603 29 100.0 32 ............................. TTTTCCAGGTCAAGCATGGTCGCCTTAGAGAC 197542 29 100.0 32 ............................. GCGCTGGCCTCTAAATTTGGCGCGATGCCGCC 197481 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 197420 29 100.0 32 ............................. AAACGGACGGCTCCCTACAGCAGTTTTTAGCC 197359 29 100.0 32 ............................. GGCTGGCAGCGCATTTTTATACGTGAGTTATC 197298 29 100.0 32 ............................. GTTCCAGGTAGATACCGATCCCCTGGCGAATC 197237 29 100.0 33 ............................. ACGAGGAATAAACGCCCCGCGCCACGTTATCAC 197175 29 100.0 32 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACG 197114 29 100.0 32 ............................. CACACCCTGGCTGGCCGGGTCGCTAAACTGTC 197053 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 196992 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 196931 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 196870 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 196809 29 100.0 32 ............................. AAAGAGCGCGGAATGATTTTTAACGGTGAGAT 196748 29 100.0 0 ............................. | A [196721] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAATATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTAACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCATTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 216800-215063 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMF01000002.1 Salmonella enterica subsp. enterica serovar Agoueve strain CFSAN059884 CFSAN059884_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216799 29 100.0 32 ............................. CCCGTTGACGCCAACGGAAATAAATTGATGGA 216738 29 96.6 32 ............................T TTTGAACTGGAAGCAGGGCGCAGAACCTCGCC 216677 29 100.0 32 ............................. CCTCTAATTTCATAAAATCACCTGCAAATAAT 216616 29 100.0 32 ............................. CTGAGGGGGGGATTACCGAGGCGTTTTATTTG 216555 29 100.0 32 ............................. CCTCCGGCACCTCCTGGCGGAACTCAGCGGCA 216494 29 100.0 32 ............................. ATCATCAACAAGATCACGCCGTCGTTTTTCGC 216433 29 100.0 32 ............................. TTGAGGAAGTGCCGGGCGATAAAAGTCGCTAT 216372 29 100.0 32 ............................. GCCGAGCATAGTGTTCCCCGCGCCAGCGGGGA 216311 29 100.0 32 ............................. TCGTTATTTTCTTCAAGGAAGGTTATGACCGT 216250 29 100.0 32 ............................. CGTCGCGGTGATAGCCACATTATTCCTGAGAT 216189 29 100.0 32 ............................. GGAAAATTCACTCCTTATACACGGATGAAAAT 216128 29 100.0 32 ............................. TATTTCACGGAATCAACACTGCTGGCCGCGAT 216067 29 100.0 32 ............................. GCCTGGCTGGACAGCGAGCTCAATACAGAAGA 216006 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 215945 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 215884 29 100.0 32 ............................. TACCACTGGCGCGGTTTGTCGTTTCAGTACAT 215823 29 100.0 32 ............................. TCTGGCCCATGCAGGCTTTAATTGAGAATGCA 215762 29 100.0 32 ............................. GTAATGTGGTGATTTATGAAATATGTTCATTT 215701 29 100.0 32 ............................. GCCGTCATTGCTTGCAACCTGTTCACCAAAGA 215640 29 100.0 32 ............................. TCATCTGTCAGGCGGTATTCCAGTTCGGCAGG 215579 29 100.0 33 ............................. CGGAAATAGCCAGACGTATTGGCGCAGCACAAT 215517 29 100.0 32 ............................. ATCACATCTCGAATATCGAATTAAAAACATAC 215456 29 100.0 32 ............................. TTTTATTATCCAGGGCGTTATCGCTAAAAGCG 215395 29 100.0 32 ............................. TTGCGGCGCATGGGGTTGCACCAGTTTTTACG 215334 29 100.0 32 ............................. TCGGATATGACCTCTATCATGATCATGCTCTT 215273 29 100.0 32 ............................. GCCGAGGTGTGGGCGGCAAAACTCGACAGCGC 215212 29 100.0 32 ............................. AGGATTTCGGCAATGATGTCGCTGCATATGAA 215151 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 215090 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTACTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGACCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //