Array 1 96188-94573 **** Predicted by CRISPRDetect 2.4 *** >NZ_NETG01000001.1 Escherichia coli strain BI01 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96187 29 100.0 32 ............................. AATACTTTAATTAGCTTTCTGAATAATAAAAA 96126 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 96065 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 96004 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 95943 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 95882 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 95821 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 95760 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 95699 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 95638 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 95577 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 95516 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 95455 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95394 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 95333 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95272 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95211 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95150 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95089 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95028 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94967 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 94906 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 94845 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 94784 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 94723 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94662 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94601 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112691-111686 **** Predicted by CRISPRDetect 2.4 *** >NZ_NETG01000001.1 Escherichia coli strain BI01 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112690 29 100.0 32 ............................. GACAGACCAGTGGCGGCGGGGTAAATAAATGA 112629 29 100.0 32 ............................. GAACGGGTACGATTGTTATTAGTGGCGAGCCA 112568 29 100.0 32 ............................. TAAATTAAAAATCGCCCGCACCGACTACCGAT 112507 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 112446 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 112385 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 112324 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112263 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 112202 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 112141 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 112080 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 112019 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111958 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111897 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111836 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111775 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111714 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //