Array 1 71079-71286 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQB01000018.1 Vibrio cholerae strain A110926W4 NODE_24_length_140844_cov_28.070787, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71079 28 100.0 32 ............................ CGCACGAAAAATCTTATCGTGCACGTTGTTGT 71139 28 100.0 32 ............................ AGACGAGAAAGCCTGTCTATCTGTTCAATGAT 71199 28 96.4 32 .........C.................. ATGAAAGCCCCACGGACAGCCAAGCGGCTCCG 71259 28 92.9 0 .........C.................T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGTTCTGCTGAATAGGCAGCCAAGAAA # Left flank : CATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGCAGAAGTAAGGTTTGTTCGTAATCAGACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATTAAACGCAGTATGGCTAGGGCCGAGTTATTTGGTGTTGAACAATCATTACCAGTAACGAATGAAGACCGTGTCATCGATAGTTTTCATCGAATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACAAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCCTTTTGACGAAGACTCTTTTTTAGTTCAGTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAAGGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTATA # Right flank : TAGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCCATTTAAGAACTGCAACGCACTTTTGTCGAGTAGACGACACCTGTTACCAAGTGTCGTCCCTCTAAGAACCCAGCATGCAACTTTCACCGCACTAGGCTCAAGCCTTCACAAAGGCACCTGATGGCACCCAGCAACTTATAAAGCAGCGAGAGCAGGCTCATGCCAAGAGTTACGGCATGGCTTCTTTGATTTTCTCTTAGCCAAGTATTCTTGGTATTGAGGATCAAAAGGCGTAGCGGCACTCCTGATTTTCACATGTCTCTCTATTGGCACCTTAGCTATTTGGAACAGATTGAACTGACAATCCATATTCATGATCTTCTGCCAACCGTGAAATTGCCATTGACCTTGACGGTTGATGAAGTATTTAAGG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCTGAATAGGCAGCCAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 9616-12044 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIQB01000088.1 Vibrio cholerae strain A110926W4 NODE_112_length_77749_cov_28.825039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9616 28 100.0 32 ............................ GATAACCATTGTTAAGACGGTCAAGTTAATAG 9676 28 100.0 32 ............................ TTACGGAATGTCTTGGTCTGAGAGCCATTGAA 9736 28 100.0 32 ............................ GTTTTGAATGCTATCAACGGCCTTGTGTCAGA 9796 28 100.0 32 ............................ TAAACCGAACTGATAGGCAGGATTCTGGAAAG 9856 28 100.0 32 ............................ ATGCTTTGGTGCGTATCTTGATCGATGATGAT 9916 28 100.0 32 ............................ GCTTATCCGTGGCATTTACGGCCGAGATTATG 9976 28 100.0 32 ............................ TATAGCAGGGAATCCATTGGCGTTAAGAAGCC 10036 28 100.0 32 ............................ AAAGTCAATGGAAAAAGGAACCACAATCTTAT 10096 28 100.0 32 ............................ AGAAACTCCCTGGTATTTTTTTAAAATTTTTA 10156 28 100.0 32 ............................ ACAGTGCGCGGGCGAGGTTTTGCGGGTCATCA 10216 28 100.0 32 ............................ ATTTCCTGCACGTCAGACGCCTTATATTGCTG 10276 28 100.0 32 ............................ GCGCGCACACGAATGCGGTTGCCGGGCAACTT 10336 28 100.0 32 ............................ GTTATAGTCGAAATTCGTACGAGTGAAGTTCC 10396 28 100.0 32 ............................ TGTAAATTCAAGACTTTCCGATTATTTAAGTT 10456 28 100.0 32 ............................ GATGTCGAATAACCAAACGATCAGGTCTGTAA 10516 28 100.0 32 ............................ CAGAATCTTGCGGCTGTAAACATCAGCCCAGA 10576 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 10636 28 96.4 32 ...........T................ TGTCGGCTTGTCGGATTTGCACCGTCTAATTT 10696 28 100.0 32 ............................ ATCCTCTAAATTTTCAACCGTTCCGTTATTAG 10756 28 100.0 32 ............................ GTTATATCGTTTGATGTTTGTCTCGACAGCTT 10816 28 100.0 33 ............................ CACTAGGGCATTCATCAAGAACGGCTTGTACTT 10877 28 100.0 32 ............................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 10937 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 10997 28 96.4 32 ...........T................ GCCAATGCGAGAGCCGGCAATCAGGTCATCAG 11057 28 100.0 32 ............................ TTAAGCGGATCCGTGGTAGTGGACTACCAAGC 11117 28 96.4 32 ...........T................ CGCATCACCACAAGCTCTCTCTGTCTCTATAC 11177 28 96.4 32 ...........T................ TACCGCGTGACGCGTCACGCTAATTTTTGCGT 11237 28 96.4 32 ...........T................ ATCAGCAACAGCGCCGGGTATTCGCACTGCAC 11297 28 100.0 32 ............................ TGAGAGGGAATCAAGTTGTCTAGAGAATTAGA 11357 28 100.0 32 ............................ AAGAAGCGCGGTAGCCTGTAGCATTCATCATT 11417 28 96.4 32 ...........T................ TGAATCAATCACCGCAGCAAGGGCGGCTTTAG 11477 28 96.4 32 ...........T................ TCAATCCACGTTGCCAACATATCTTTTGCTTC 11537 28 96.4 32 ...........T................ CTGCCTCGTGGGTGAGCGTTTCCTGCACTAAC 11597 28 96.4 32 ...........T................ TAAAGGAAATGATAGGCCGTGATAAGCGGAAC 11657 28 96.4 32 ...........T................ GACATCCGAGAGTCTATTGCCGAGTGGCGCAC 11717 28 96.4 32 ...........T................ GTTTCTAAGGCTTGTCCTGCGCCCGACGTTGT 11777 28 96.4 32 ...........T................ ATTACTACTTTCTCGATGGTTCGTTGCTCAGC 11837 28 96.4 32 ........T................... AATACATGTTTGGCATCGCTAACCAGCTTTAT 11897 28 100.0 32 ............................ TTCTATGACATTCCCGCCATGAAGTAATTGAA 11957 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 12017 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 41 28 98.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //