Array 1 475530-475895 **** Predicted by CRISPRDetect 2.4 *** >NC_021486.1 Streptococcus agalactiae ILRI005 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 475530 32 100.0 34 ................................ TATACAAACTTCTGCGTTATCTTCGTCATAATTA 475596 32 100.0 34 ................................ AAGTGGGTTAGTACAACTGAATGGGATGAAAAAC 475662 32 100.0 36 ................................ CTAAAGGTGTCTTATGGGATTCGAACCCATAGTGGC 475730 32 100.0 35 ................................ ATGCATTGATGTAACTTTCTATATTATTGACAACT 475797 32 100.0 35 ................................ TCCCAGTCCAATGTTTTATTAGCCATCTCAGCCTC 475864 32 84.4 0 ...................T..A.T..C..C. | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.4 35 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGATATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAACTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAGCATGTGTTGGTAGAGAAGCCTTTCACATTGACTTACGACCAAGCAAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 933638-933871 **** Predicted by CRISPRDetect 2.4 *** >NC_021486.1 Streptococcus agalactiae ILRI005 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 933638 36 100.0 30 .................................... CTAGTCAAATCTTGCAAGAGATTAGTGACA 933704 36 100.0 30 .................................... GGTCTTTTAGTTTTTTGATGTCATCAACAT 933770 36 100.0 30 .................................... TAAGAAGTATAAAGAGCTTCTACGCACCAT 933836 36 94.4 0 ............C...............A....... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGTTTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CTTTAATATCGTCTATATAGATTCCTGGACGGTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGACATCATTGTGGTGTTTTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTAGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGCAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGACTATAATTCCAACCTTATGGTTAAAGGATAAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGTGTTTGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //