Array 1 4282-8181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQD01000055.1 Methanosarcina mazei strain 1.F.A.2.8 scaffold51_1_size22620-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4282 37 100.0 35 ..................................... TTATCCAACCTATCACACCTAATTTTTTAGTTGGT 4354 37 100.0 35 ..................................... CTGTTCTTTGAAACTATTCTATTCATGCGTCCTAT 4426 37 100.0 36 ..................................... TAATGTGTTCGACGGCTGTTCAAATGCGGGAATAGT 4499 37 100.0 34 ..................................... ACTGTACTGCTTTTTTACCTGCAAAAGCTGCACC 4570 37 100.0 33 ..................................... TGATTGGTTCAACTGGACTGTAAACAAGATCAG 4640 37 100.0 35 ..................................... TACTAAAAACGAGTACAGTTGATAGAATAAATAAT 4712 37 100.0 36 ..................................... CACAATACCCACAAAGGGAGGCTGTAACATGAATTT 4785 37 100.0 35 ..................................... ATAATGTTCTGGCAGGAAGAGAGAACCCGGAAACG 4857 37 100.0 35 ..................................... TCGTATCTTCTACGTAACCAATTAGGATATCTAAG 4929 37 100.0 34 ..................................... CAACTTTGAAAGGCGGATAATCTTCTTAATTTCG 5000 37 100.0 36 ..................................... ACATAAATGGAAACACATGTACACAAATTTTCATCA 5073 37 100.0 36 ..................................... TGAGCAAGCACTTTGCAGTATTCGGCGGGAGTGGAA 5146 37 100.0 35 ..................................... ACTCTTGATGAAGGCGCAGCGCTCCTGGCAACACC 5218 37 100.0 32 ..................................... TCAGATAATATAAAATCAACTAAAATTGATTT 5287 37 100.0 35 ..................................... TAGTCGCCTGATCTACATTTATATCCTGCTTTCTA 5359 37 100.0 35 ..................................... CCCTTCTTACCATCGTTCAAGCCTCCTGCTTCTCT 5431 37 100.0 35 ..................................... CACTTGCTAAAAGTGTGTATCCATTCCCTAGATCC 5503 37 100.0 37 ..................................... GACGACTTGAAGAAAGAGCTTGAAGAGCTTAAAGAGG 5577 37 100.0 37 ..................................... TCGACAATATTTGAATCCAGATTTGGATTTAGTTTTT 5651 37 100.0 35 ..................................... ATTTCTCAGCCGGGTGTCCTGCTTCGACAAGTATC 5723 37 100.0 36 ..................................... ATAAGGACGCAAGACCGGACTTAGGCTGTCTTCAGG 5796 37 100.0 38 ..................................... TAATAAGTTAGGTGGTCCGTGTCAGGCATTATAAAGTG 5871 37 100.0 37 ..................................... AAAGTGTTATCGGACTTTACAAGCTGCTGGAATTTCC 5945 37 100.0 37 ..................................... CATTCGTGGTCCCTATACCTACAGAATTTCAGATAAG 6019 37 100.0 35 ..................................... CGGTTCTACCGACAACACAACATGGTCAACGGATG 6091 37 100.0 35 ..................................... GTTAAGGCGTTGTGCCTTGAGGTGAGAATAACATG 6163 37 100.0 36 ..................................... TGGTTGATGTATGCGGTTCTGCCGGGAACATAATAA 6236 37 100.0 36 ..................................... TTGAGATCCATTTCCATTCTCCTTCGGGCAGTTCTC 6309 37 100.0 37 ..................................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 6383 37 97.3 35 .....A............................... TAAAGTGTTTCTGCTAGACCCCAAAAATGCCCGAA 6455 37 100.0 38 ..................................... CCACGTTTTCACATCCGAAGCGTTTTCCGCATTTCGTT 6530 37 100.0 35 ..................................... TATAGATAAGGATGGGATTTACTGGAATTTTTACA 6602 37 100.0 35 ..................................... TTTCAACTCACCTTCGATCTCGTCGCGGATGTAAT 6674 37 100.0 37 ..................................... GATATACCTTATAGTGTATACGTTAAAGGTACACCGT 6748 37 100.0 37 ..................................... TAAAGCTTCGCTTAATTTTCCGGACAACCTTCGAAAA 6822 37 100.0 34 ..................................... TCCGGTTCGCCTGGTCGAACGCGTCGAGCGTCCT 6893 37 100.0 37 ..................................... AGCGCTAGACCACGCACATATAGTATATCCTTAAAGT 6967 37 100.0 38 ..................................... AGGATATACTATAAACGACGTACTTTAAGGATATACTA 7042 37 100.0 38 ..................................... ACTGACTGTTTTCGCGATTGAATACATATACTTACGAA 7117 37 100.0 36 ..................................... ACTCTAAAAGAACTCGGTTTGATCACGCTGAATCTA 7190 37 100.0 37 ..................................... GCATTGAAAGCACAATGGGAATCTAAAGCACAAATCA 7264 37 100.0 36 ..................................... CGATCCTTATATCTCCTGCGTCTGTTGCTGTCATGT 7337 37 100.0 38 ..................................... TTATCCCTGGAAGATGTAAATCTATTCAGGAGAGTAGA 7412 37 100.0 34 ..................................... TCGCCCGGCTCCTCCTCCTGCCGCTGTAGTATAA 7483 37 100.0 38 ..................................... GATACTGGCGTTATACAGTTTTGAAGTTCGAAAATACC 7558 37 100.0 38 ..................................... TCTGATATAATGAAAAATGCCTTCGAAGATGCAAATAT 7633 37 100.0 35 ..................................... TTCGCCTCCCTTACTCGACCAATGACACATAAAGC 7705 37 100.0 37 ..................................... TTGAGAATCCACTGTCAAGATCCTGGCTTTTAGACAA 7779 37 100.0 35 ..................................... TGAACATATTTTCTTGCCTCTTCTGTTGAATATCC 7851 37 100.0 36 ..................................... TTGTACCTGTAATTAATGGAATTGGTACATAGCCTT 7924 37 100.0 37 ..................................... TAGACACGACAGCAGGAAATGTTTATATTTCTAAAGC 7998 37 100.0 37 ..................................... AACTCATTCCTTCTTGATGTCTGAAGCCAGCCTTCCC 8072 37 100.0 36 ..................................... TGATCGAGATAAAGATAACTGATGAAATGCGAGAAA 8145 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ====================================== ================== 54 37 99.9 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : ATAAACTGATACTTTCCCTTGTCCAGGACTGGCTCAAGAAAGGCTCACAGGCAAGCGGTTCCGGGAAAAATTCTGGAAAAGGGCTGCTTCAGGGTGGGATAATCTCTCCGCTTCTTGTAAACTTCTACCTGGACCAGTTCGATAACCACTGGGCTGAAATCGGGCTCAAGAATGTTGAAGGGGAATCAATTGAGCACCTTGTCCGTTTTGCAGATGATTTCGTGGTCCTTTCAAAGGAATGGATCAACCCTGAGAGAGTTAAGGAAGCTATGGCTGAACTTGGACTTGAATTAAACAAAGATAAGACCTATGTCGGGACTGCCGTAAATGGGTTTGAATTCGTGGGTTTTTACTTTGAGGAAATTGAAGAGGAAAACGGGGCTGGGAGCATTATAAGAGTTATGCCTACCGAAGGGTCTATTGAGAAGGTAGTCGAGAGTATTGAAAGTATTGGAAGTAATGGAGATGTATATAATATAAATAGCATAGAAAGTCAAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 10631-7181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQD01000187.1 Methanosarcina mazei strain 1.F.A.2.8 scaffold47_1_size23004-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 10630 37 100.0 36 ..................................... GAGAAATAGGATAATAGAGTTTTTGCGTCTGTAGCA 10557 37 100.0 37 ..................................... CTGTGGAAGCTGGTACAGGGAGCGTTAAAGTAATTGA 10483 37 100.0 34 ..................................... TATCGCATGTCATATGTCCAACCCCAGATTAATA 10412 37 100.0 37 ..................................... CCATCTATAATGTTATGGGCATATTTTGGTTTTACCG 10338 37 100.0 35 ..................................... CAATCCTGATCATGATATCACGTCGCCGGATCTAA 10266 37 100.0 35 ..................................... ACTGAAATCCCTTACGGTGGGCATCTACGATCTAT 10194 37 100.0 37 ..................................... CATGTTGAACAATATTTTTCTTCCTGTCCGGTGAAAC 10120 37 100.0 35 ..................................... CACCCTATTATCGTGTAGCTGATTGATTTTTTCAA 10048 37 100.0 35 ..................................... TGTGATAGTTGTTTTTTTCAAATATAAAAGAAAAT 9976 37 100.0 35 ..................................... CTTCACTCTCCGTTCAATATTCGGTGTATATCATG 9904 37 100.0 34 ..................................... ACATCCGGCTCGGTCTTTCTCCTGCGGATCATTT 9833 37 100.0 34 ..................................... TTATATCCGTACCCTAGCGCTGCCCAATCTCTAA 9762 37 100.0 35 ..................................... AAAGTTCAGCATCAGATAGTAATTCCAGTGAGGCA 9690 37 100.0 35 ..................................... CCATGTCAGCACAAAGGGATTGAATAGGAAGGTTT 9618 37 100.0 37 ..................................... TAAAGTTGTATAGATCAAGCCTTCGTCTGTTACTGCT 9544 37 100.0 36 ..................................... CCCTCATTCTCCCACAGAACATTAAAATCTGAGATC 9471 37 100.0 37 ..................................... CTTATTATGTTGATGAGTAGTACAATTATCGTGCCGG 9397 37 100.0 36 ..................................... TTCATACACTCCGACGCGGCGACTCTCGCCCATCTA 9324 37 100.0 36 ..................................... TTCGTTTGCAGATATTCCAATATTCTGTCTCTGAGT 9251 37 100.0 37 ..................................... TTAGTTACATGCATTTGGAGCAAAGTAAAGTTAGAAT 9177 37 100.0 37 ..................................... TTCAAAATGGACAGTTGTCTGATTTGAATATTTTCCG 9103 37 100.0 35 ..................................... TTGAACATGAGGATAAAGAAGTACAGATCTTAAAA 9031 37 100.0 36 ..................................... ATCCCCGTTCCGGCATGGATTAGGGATGAGCTTAAT 8958 37 100.0 36 ..................................... CACTGTTGCAGAAGGTGGAGCAAGCGACATTGTAGC 8885 37 100.0 35 ..................................... TATTCTTGTAAACCATGTTTGTATTACTCCATTGC 8813 37 100.0 34 ..................................... TCCATTCCAACCAGCATCAGTTAAACATATTATG 8742 37 100.0 37 ..................................... AGTATTAAAAAGGCATTATTAGAAAATTGAAGTTCAA 8668 37 100.0 38 ..................................... TTAAAATCCCTTGTAAACTCGTCAATATCTGATACAAT 8593 37 100.0 35 ..................................... AACAAGAACTTAACAGCATCAGAAGACAGCTTAAA 8521 37 100.0 35 ..................................... TCTGAGACTCATTATAAAACCCAAATGCGAATTTT 8449 37 100.0 33 ..................................... CTCGTACCTTATAAATCCCAAAATCAATATTTT 8379 37 100.0 36 ..................................... CATTTCCAACGGCGTATTAATTTTTTCATGTATGTG 8306 37 100.0 34 ..................................... CTTAAATCTGTCGGTGTTTTTAAAAAGAGTAAAG 8235 37 100.0 35 ..................................... TCAAACTTTGTTAAGAGAGGGCTTACCAGTTCAAA 8163 37 100.0 34 ..................................... TTTGGATTGGCTTAATTCCCTTCTCTGCATGAAG 8092 37 100.0 35 ..................................... TAATAAAATTTGGGTATTGAAACCATTACATTACC 8020 37 100.0 37 ..................................... TTTTCTAAAACTGTCCCGATGAAAGTATAATCATCAA 7946 37 100.0 35 ..................................... ATTCTTCGGACTCACCGGTTAATTCCGGAAACACA 7874 37 100.0 36 ..................................... TCTGAGCAATAATAGGCGTCATTGAAGCCCACATGC 7801 37 100.0 35 ..................................... TAAATGTGGTCAGATGAAACACATAGCAGGAGTTG 7729 37 100.0 36 ..................................... CCCGTCTGGTAACTATGAAGAGTACGACGGTACTTT 7656 37 100.0 38 ..................................... CACACTCTATTGAATTCTTCAGGGTTTTCCCACATTTT 7581 37 100.0 37 ..................................... TACACCCGCATCCATTGTTTGAGCACATTTCAGTTAG 7507 37 100.0 34 ..................................... CTGAAGGAGATTACATCCTGCAGTTTTATATTGA 7436 37 100.0 36 ..................................... TTTCGAAAAGTCCGGGTAAAAATTGCAGCGTTGTCC 7363 37 100.0 35 ..................................... ATCTGTAGTCATTTTAGATATACCTCGCAAACATT 7291 37 100.0 37 ..................................... TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 7217 36 75.7 0 .....T.....T..........G.GCCT-.......A | C [7185] ========== ====== ====== ====== ===================================== ====================================== ================== 48 37 99.5 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATATTTTTATTGCCTCAAAAAAGAACCATATAAAAGGAATCGTTGACGAAGTTTTATTTCTGGAAGACGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : GTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //