Array 1 1295720-1293797 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP002427.1 Lactobacillus helveticus H9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1295719 29 96.6 32 ............................C TTACCAGCTTGCATAGCTTGACCGCTAATTGC 1295658 29 100.0 32 ............................. AGCGCCTTCAATTTTAGTCTGCCAAGCATTAA 1295597 29 100.0 32 ............................. ACTACCCCAACAGTTCTATCTTCTGAAAAAAA 1295536 29 100.0 33 ............................. TATTCGCAGGACAAGTTGTCCGCATTGCATAAG 1295474 29 100.0 32 ............................. GTATTACAATCGACAGCGTTAGCCAATCTGCG 1295413 29 100.0 32 ............................. AAGAGAAGTCCGAAATATATTTCTATCATTAT 1295352 29 96.6 32 ............................C ATTGTTTTGCCGGTTTTTTTACAATAATTTTG 1295291 29 100.0 32 ............................. GATTGGCGTTTTCTGCATCCGACCGATGGAGT 1295230 29 100.0 32 ............................. ATCAAGTAAGCCTTCAATGTAAGCAACTGTGG 1295169 29 100.0 32 ............................. CAAATGTAGTTTGCATCAAGTCTGATGGAACA 1295108 29 96.6 32 ............................C GGCTCAGGAGGTGAACAAGAAAAACAAGAAAA 1295047 29 96.6 33 ............................A CCAGAAACAAAATAATGATCTGCTGAAAATGGT 1294985 29 100.0 32 ............................. CTAGGCTGGTCGGCTCATTCAATGTGGAATGG 1294924 29 96.6 32 ............................C GGAACACATTCCAAAATCACAGGCAAAAATGG 1294863 29 100.0 32 ............................. TCATAAGGGTCTGATATATTCTCATAAATGCC 1294802 29 100.0 32 ............................. AAAATGGAGGTAGCAAAGGACGATAATCAGAT 1294741 29 100.0 32 ............................. CATCATCGTTAGTCATCTAAGGTTATACGGTA 1294680 29 100.0 32 ............................. ATGGCGCTCAGCTAACATTTGATGAAGATTAC 1294619 29 100.0 32 ............................. ATTAAATACCCGACATTAGTCGAACAAAGCTA 1294558 29 100.0 32 ............................. AACGACGTTGACAGCTTGAGCCTTACCAATTA 1294497 29 100.0 32 ............................. ATCATTTGAATTTGCTACACGTACCCAGGGGA 1294436 29 100.0 32 ............................. GAAGCATGGTCAAAAAGTCGTAGATCATGGAA 1294375 29 100.0 32 ............................. CATGCTAGTCCTGATGATTCTGGCAACATCCA 1294314 29 96.6 32 ............................C CTCACATTTACGCATACCGGTTGCGGCAAGAA 1294253 29 100.0 32 ............................. TATTGAGCAACTTCGATAACGCGTTGCTTTTG 1294192 29 100.0 32 ............................. CTTGGCTGGTCGGCTCATTCAATGTGGAATAG 1294131 29 96.6 33 ............................C CAACTCCTACTCCTACAGCTACTGCCGCCACTG 1294069 29 96.6 32 ............................C AAATAGAAGGAGAAAAGGACAACCGATAAGAG 1294008 29 89.7 31 ..........................TAA CCGATGGAACAGAAAACATCTTTGATAAAAG 1293948 29 100.0 32 ............................. AACCTAATAGACGAGAACGGAAACCCAACCGA 1293887 29 96.6 33 ............................C GATGTTTTTGCTACCGATGAACACAAGCCAATA 1293825 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.9 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTGTTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGGTAGAGCAAGGCGGCTTTTAAAGATGATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTAGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCACCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1309025-1307835 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP002427.1 Lactobacillus helveticus H9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1309024 29 96.6 32 ............................C ATGAGGAGTGAGTTTTTCACTTCCTTATTCAA 1308963 29 100.0 32 ............................. TACATTTCCAAAAGGATAAATAAAATTGTTAA 1308902 29 96.6 32 ............................C GACAGTCTCCTTTAAAGAAGCTATGTAATAAA 1308841 29 100.0 32 ............................. GCAGATTGCATATGAGTATCAACCACAAAAAA 1308780 29 100.0 32 ............................. CAAAGTCGGTTACTATGCCGTCACAAAAACAG 1308719 29 100.0 32 ............................. AAGCTTAAGCCTGACTACTTAGAAATTGATGG 1308658 29 96.6 32 ............................C TAGCTTATAAACTAACAAGAAGTTAGTTTGTG 1308597 29 100.0 32 ............................. GACAATGCTATAGACAACCCATATGGCGAAAA 1308536 29 100.0 32 ............................. TAAAGGAGCATATTGATTATGTTAAAAAATGA 1308475 29 96.6 32 ............................C GCGTGGTCAGCGACTGAATAGTTTGATTTTGC 1308414 29 100.0 32 ............................. AACATTATCAATCTTGCTGATAGCTGAATTAA 1308353 29 100.0 32 ............................. TGTTTGATTGATTCTTCAAGTTCAAGATAGGG 1308292 29 100.0 32 ............................. GGAGTTAGCAAGAGTTCGGAAAGACTTAAAAG 1308231 29 96.6 32 ............................C GATTTTTTCGATTCTGTTTTTAAATTAAAAAA 1308170 29 100.0 32 ............................. TTAGTAATAGTTAGCAAGGGACGAGAAAAGTA 1308109 29 100.0 33 ............................. ACGAAAAGGAAACAGACGGCTATATGCGTAGCA 1308047 29 100.0 32 ............................. GAATCTAATTATTAGATAAAGATATAAGAGCC 1307986 29 100.0 32 ............................. GAATCTAATTATTAGATAAAGATATAAGAGCC 1307925 29 96.6 33 ............................C ATTGACCTGCGATGGTCTTAATCCTTCCCAATA 1307863 29 89.7 0 .......................A...TA | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.5 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGTGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : AAAGCTTTCAAGTGCTATAAATAGTTCATATATAATCATAAATTATTAGTTTAATTATTTAATAAGCAATCATTTGATATGATTGTTTATTTTTAAGTCTTGCTTTAATGATTTTATGAGTATATATGATATAATATTAGTGAAGGAGATGATCTTTTGGAAGCTGGAAAAGTGATGGATTTGCTTCAAATCAGTCGTTCAACTCTGAAACGCTATCGTGAAAAAGGAATCCTTGAGGCTAAAAAATTGCCAACCGGTCAATATGATTTTGATGATGATTCCGTTTTTTGCTTAAGAATAAACATTCCAAACGCTTGACCGTTTTATATGGCCGAGTTTCAACCTATAAGCAGAAAACTGATTTGGCTAATCAAATGCAGGAGCTGTCTGATTTTGCCCAAAGCAAAGGCTTTCAGGCAAACGATAGCTTTCAAGATATTGCCAGTGGCATTTCTTTCAAGAACCGAAAGCAGTTTTTCAAGATGCTTGACTTAATCTTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1424791-1423044 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP002427.1 Lactobacillus helveticus H9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1424790 30 100.0 36 .............................. TGATTCAACACGCACACCAATTGTTGCTGGCACCAG 1424724 30 100.0 36 .............................. ACCGTCAAAACTTGGTTCGGTTGCATCTGGATTATA 1424658 30 100.0 36 .............................. TACGGTGGTAAGATTCCAGATGAATTAAAACAAACA 1424592 30 100.0 36 .............................. TTGAAAAGCTGTACTATAGCCTTTTGGCGTTGCCAA 1424526 30 100.0 36 .............................. ATGGAATAGCTTATCAAGGTTACTTGCTGATACATT 1424460 30 100.0 37 .............................. TTATATGCGAGCTTCCGGTTAAACATCGTTTAACTGG 1424393 30 100.0 35 .............................. AGGAGTTCCCTTGACTCCTTGCATGCGTCCGCGAG 1424328 30 100.0 36 .............................. TTGAACTTTAGGCTTAGCCGCCATTTGAGTGGCTTG 1424262 30 100.0 36 .............................. AAAGATGTTCAGCATATTTTAGGGCATACTAAAGTA 1424196 30 100.0 36 .............................. TGGTAAGCCGGTGCTGTTTCGTAGTAGCCTCGTTGG 1424130 30 100.0 37 .............................. TTAATGTCGTTCCATCAGATTTGATGCAAACCACTTT 1424063 30 100.0 36 .............................. CGTCAAGAAGCTATAGTAACTAATCAAAATGATATT 1423997 30 100.0 36 .............................. AGAATATCGTGAGCAACTGCTAAAGACAGTAAATGA 1423931 30 100.0 37 .............................. TAAACTCACGTAAAGTAAAACGAACTATTCTATCGTG 1423864 30 100.0 36 .............................. CTGTTACGGATGTCTTCAATGTTTGCTCTTACAACC 1423798 30 100.0 35 .............................. TAGATTTAAACGTTGCGTCCCATGCTTGTACTGTC 1423733 30 100.0 36 .............................. ACAAATTTTATTAAGACAGATTACTTGGACAACAAA 1423667 30 100.0 35 .............................. GGGAACAAATTAGCTTGCTTAATTTGAGCCTTAGT 1423602 30 100.0 35 .............................. GCAATGATAGCTAGTAAGTAGCTTGCAATAGTAAT 1423537 30 100.0 36 .............................. TTTTCATGTACTTAAACACCTGTTGGGTGTCTTGGT 1423471 30 100.0 36 .............................. TACTTGTCGGAAACATCGTAATACTTTTCGCATAAG 1423405 30 100.0 35 .............................. GCAGTAGTGTCTGTGTCGTTCATGTAATGCGTAGT 1423340 30 100.0 37 .............................. ATAATAATGGCGTAGTTAGTAGCTTGAGTTACTGTCA 1423273 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 1423207 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 1423139 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 1423073 30 73.3 0 .A......C.......G...G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 98.0 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACGATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATGAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //