Array 1 342381-344002 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIZ01000003.1 Listeria monocytogenes strain FSL L7-0487 NODE_3_length_349358_cov_18.544645, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 342381 36 100.0 30 .................................... TTTATAAGCGTCAGCAGATTGGTTAGTGTC 342447 36 100.0 30 .................................... GTTGCCAGTTACTACGAGATCGTTTTCGCC 342513 36 100.0 30 .................................... AAAGAATATGAATGATTCTTTTGATGTAAT 342579 36 100.0 30 .................................... TATCATCTTTTTCAGATGTTACTTGATAAG 342645 36 100.0 30 .................................... ATTGCAACTGCAACTATCGAAAGTGGTCGT 342711 36 100.0 30 .................................... CGCTGCAAATGCCATGAAAGCATTCTCTTC 342777 36 100.0 30 .................................... GATAAGTTTGCGTTTTGTGTAGTGCTTGTA 342843 36 100.0 30 .................................... TACATCTCCGCTTGCATACACCCTTATCGC 342909 36 100.0 30 .................................... GCACTATTAAAGTGCCACGACACATCGAGC 342975 36 100.0 30 .................................... AAGGGGTGGAGTAAGATGGCTACAGTAAAC 343041 36 100.0 30 .................................... TCCAATTCGTCAATCAACTGGCGCGCTGTT 343107 36 100.0 30 .................................... AGGCGTTACACGTTATTCACAGAGCAATGA 343173 36 100.0 30 .................................... TTACACCGAAGAGAAAGCCACCGAATTCAT 343239 36 100.0 30 .................................... ACAATAAGAAATAGTAAGTTCCATTTCTTC 343305 36 100.0 30 .................................... TATATGTTCATAGTAGTGCCTATGTCTGCA 343371 36 100.0 30 .................................... AAGGAGTTGAGACAGTGAAGGATGTTTTAG 343437 36 100.0 30 .................................... TTTTAGAAATTGCTTATAAAACGAACGGCA 343503 36 100.0 30 .................................... GTCCGCAGTGAAGGAAGCATATGACCGTTA 343569 36 100.0 30 .................................... ACCCGTTGGGAATGTTAGGTACATTACTAA 343635 36 100.0 30 .................................... ATGCACTATCCGCTTTTGCTTGTGATCCCG 343701 36 100.0 30 .................................... GCATCTGCTAGCGCGGAAGGTCAGTCGCAG 343767 36 100.0 30 .................................... ATATGTTCCTGAAGAGGATTTTGGTAAATG 343833 36 100.0 30 .................................... TATCACTGCCGAGCTTGGTGATGTGAAGAG 343899 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 343965 36 77.8 0 ............CA.....C.....T.A....T.GA | A,A [343990,343996] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGGTGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATTCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACTGCTGAAAGTTGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATCTTATATGATTATATTCTAAATGCGAGTAAAAATAGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATATACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 171535-172018 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIZ01000001.1 Listeria monocytogenes strain FSL L7-0487 NODE_1_length_1363418_cov_13.559847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 171535 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 171599 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 171664 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 171728 29 100.0 36 ............................. CAACTTGAAACCTAGTCTGATAACATAATCAACAAT 171793 29 100.0 36 ............................. ACAATAATAGGATATTTTGGATTTGTCTGCGTTCCT 171858 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT 171924 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [171947] 171990 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 93.5 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGGAAGGGGAATTTGGCGGTATTTGCTTGGGGAAATCTTCAGGATAAGGGGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTCTGTTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 189519-191626 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIZ01000001.1 Listeria monocytogenes strain FSL L7-0487 NODE_1_length_1363418_cov_13.559847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 189519 29 100.0 37 ............................. AGCCTTCTGATACGAAAACAACACGATTTTGCGGATA 189585 29 100.0 35 ............................. TTTGTCTGATGCTCATTGATCTATTTCTCAACTTT 189649 29 100.0 36 ............................. ATTGCAGTGAAATATCTCTCTTGAATCCCTAGGCTT 189714 29 100.0 34 ............................. ATACAAATGAGGATTTTAGATATAAAATTGCTTG 189777 29 100.0 37 ............................. GAAGATATTGCTAAAAGAAATAACATTCTTCGTGAAC 189843 29 100.0 36 ............................. TTGGTTCGCATTAGTATGGAAATCAATCCTAACTTT 189908 29 100.0 37 ............................. AGCGTTGCGCAAAATATTACAGCGGGGGGGTTACTTG 189974 29 100.0 35 ............................. TCAAAATCCCGATAACAGCTACTACTGTTGTAACA 190038 29 100.0 36 ............................. CAGGAAAAAGCGTTGGAGAAATGAAAAAATATGTTT 190103 29 100.0 36 ............................. TTCAAAACGATTCAAAAAGCTGTAAATATGGTTCCG 190168 29 100.0 37 ............................. GATGTCCGATGTTACGCTATCGGCGTCCAGAGTCACT 190234 29 100.0 37 ............................. AAAAAGAATTTGTTACAGATGCAGGGTGGGGTAAAAG 190300 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 190365 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 190431 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 190495 29 100.0 36 ............................. TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC 190560 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 190626 29 100.0 35 ............................. TTAGAGATAACGTTAGCATCCGTGATAACTTGGTT 190690 29 100.0 36 ............................. CTGGTTTAAAAAAGAGTTTTTAGATCGCTTAGAAGA 190755 29 100.0 35 ............................. CCGAATTTCAGTAATGAATTTCATTCAAAAGTAGT 190819 29 100.0 37 ............................. ACAATTAACACATTGTCAGTTCTGGTCTGGTATGTTT 190885 29 100.0 36 ............................. TTGTTTATATGCACATAAATTTCGCGCATCCATAAC 190950 28 96.6 34 .....-....................... TTTATACGTATGAGTCCGTCATATCGCATATTTA 191012 29 100.0 35 ............................. AAATTTTTTGTTGATAAGCATGCAGGAGCAAACAA 191076 29 100.0 35 ............................. GCATTTAATTGCAATAAACTTTGAATTGAGATTAA 191140 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 191205 29 100.0 37 ............................. AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC 191271 29 100.0 36 ............................. AGAGAAATCTCAAGAGCCAGCCAAGCAAGAGACATC 191336 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 191401 29 100.0 37 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA 191467 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 191531 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 191597 29 93.1 0 .......................A....C | C [191620] ========== ====== ====== ====== ============================= ===================================== ================== 33 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //