Array 1 57925-59050 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBV01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00325 CFSAN00325_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57925 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 57986 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 58047 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 58108 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 58169 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 58230 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 58291 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 58352 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 58413 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 58474 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 58535 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 58596 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 58657 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 58718 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 58779 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 58840 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 58901 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 58962 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 59023 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 75309-76198 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBV01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00325 CFSAN00325_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 75309 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 75370 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 75431 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 75492 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 75559 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 75620 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 75681 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 75742 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 75803 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 75864 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 75925 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 75986 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 76047 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 76108 29 93.1 33 ..........................A.C GACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 76170 29 96.6 0 ......T...................... | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTGCCGTATCTTCGATCATACCGGAACGGTGTGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36-717 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMBV01000028.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN00325 CFSAN00325_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 36 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 97 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 158 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 261 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 322 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 383 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 444 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 505 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 566 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 627 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 688 29 96.6 0 A............................ | A [714] ========== ====== ====== ====== ============================= ========================================================================== ================== 11 29 99.4 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGTGGATTATCTGTATTTTACGGAAGTGGGCGCGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //