Array 1 242674-241004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQE01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024776 CFSAN024776_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242673 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 242612 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 242551 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 242490 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 242417 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 242356 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 242295 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 242234 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 242173 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 242112 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242051 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 241990 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 241929 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 241868 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 241807 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 241746 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 241685 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 241624 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241563 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241460 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241399 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241338 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241277 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241216 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 241155 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241094 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241033 29 96.6 0 A............................ | A [241006] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260056-258930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQE01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024776 CFSAN024776_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260055 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 259994 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 259933 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 259872 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 259811 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 259750 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 259689 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 259628 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 259567 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 259506 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259445 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259384 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259323 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259262 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259201 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 259140 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 259079 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 259018 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258957 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //