Array 1 406-198 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEIF01000048.1 Alkalilimnicola sp. S0819 S0819_contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 405 28 100.0 32 ............................ ATTCGCGGCGAGTGGGAGAGGATCGAATGAAC 345 28 100.0 32 ............................ ATAAAAAAGGCAGGCGACGTGGCTTTATCGGA 285 28 100.0 32 ............................ CTCTGCCTCGAAATCATTGTGCGCGACGTACT 225 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTCAAGATCAGAGAAGCTCGACTGCATCGACCACGTACTCACTCTCAACCGGGGAGGGCCGACATTGTCTCAAGCCACAGCCACCGACGGAACGGCTGCCCCCGAATAAATCAGCGTTTCCAAAGATGATTTCGCCTCTCCCAAAGAGGCGCTTG # Right flank : AAATCCGCCGCGTGAGTTTTTGTCGAAGGCTGGGTTCGCTGCCGCGTAGGTGTCGGGTCCCTGATGATTCCATCTCTCTCAGGAGTTACCCTCTATGGGTAGCGCGAGAGGTGCTCAGTGAGCTTAGGAGGAATCATCCATGAAGATCCGTCTGCATGCGAACGCTGCCACCACACCGAGGATCCGGCGGGAGATCCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 158-3547 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEIF01000005.1 Alkalilimnicola sp. S0819 S0819_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 158 28 75.0 32 .GGAC.C.A.A................. TAAAAATAGAGCCGTCCGTGGCTCAAAGTACG 218 28 100.0 32 ............................ GTTGATCGTTACGCAATATTTAACATGGCCGT 278 28 100.0 32 ............................ TAAAGGTGCCGGGGCCGGAACCGGCCACCAGG 338 28 100.0 32 ............................ AGAGACGAACCGACTCCGCGCCATGTGGTGAA 398 28 100.0 32 ............................ GACCGGAAACCCGTTTCTGGATCTGTGTTTAT 458 28 100.0 32 ............................ CTCACCGCCAGTGGCGCTAACGTGGGCACCAA 518 28 100.0 32 ............................ AAGGACGGACCTGTTTTTAGGAGTACATACAA 578 28 100.0 32 ............................ AGTTCCAGCGCCTGGTACTTGGAATTGTTTTT 638 28 100.0 32 ............................ TCCACCACAACGGCCACCGGGCGGGCGGCATC 698 28 100.0 32 ............................ ACCTAGAACGGGATTTCGGCTTCCCAGTGCGG 758 28 100.0 32 ............................ TTGCAGCGTGACATATTCCCGCTTGTCATTTT 818 28 100.0 32 ............................ TTTGTAGTTGACCCGAACTGTATTAGCCTCCC 878 28 100.0 32 ............................ ATCACAGGCAAAGCCAGGCGTGCTGTATCAGT 938 28 100.0 32 ............................ TTGGCCAGGCGGTAGTAGCTGATCAGCTTGTC 998 28 100.0 32 ............................ AAGCGCAGCGACCGCCAGCACCGTTTGCGGCG 1058 28 100.0 32 ............................ TCACAGATCCCTATGCGGCACAATCGGCACGC 1118 28 100.0 32 ............................ AGCACGGGGCGGCAGCGCCGCCCCGGCTTGTT 1178 28 100.0 32 ............................ GCGCCCTCGTAGCAGTCCACTAGCATGATGCT 1238 28 100.0 32 ............................ TTGATGCCCATTTCAGGAAGCGCTCCGTACCC 1298 28 100.0 32 ............................ TGAAAACCCGATGGGGTTGCCGTCATGGGACA 1358 28 100.0 33 ............................ GTTGTGTTCGTGACGGGTGGCGAACTCCGCTTC 1419 28 100.0 32 ............................ GCTCGGAAACCGTCCGGGCCGCAATCGACGAA 1479 28 100.0 32 ............................ ACGGCCACCGGGCGGGCGGCATCGCACACCGC 1539 28 100.0 33 ............................ CATTCGCGCCGCGCCCACCGCCGTTGCCGCCCC 1600 28 100.0 32 ............................ AAGGGATAGACGGCTCAGCTCGGAAGCGGTGC 1660 28 100.0 32 ............................ CAGCATCCGCGCCTTGCTGCGCACTGCTATTG 1720 28 100.0 32 ............................ TCGGCGCTGGAACGGGCGACGGTCACCACGGT 1780 28 100.0 32 ............................ CGGAACCCCGAGCCAATGCGTCCTCGGGCATA 1840 28 100.0 32 ............................ TGTGCGTGGTGTCCCGGGCGCGGGTGCCGATG 1900 28 100.0 32 ............................ TCGATGCAGTCCCCGTTATAGATGGCGTATTT 1960 28 100.0 32 ............................ AAGCGCGGTCAGGCGCTGGTCGGCCAGCTCGT 2020 28 100.0 32 ............................ AGCTCGGTGATGTGGTCGCGCACTGCGCCCTC 2080 28 100.0 32 ............................ ATGAAGAAGACCGCCCTACTCCTGCTCGCCCT 2140 28 100.0 32 ............................ TATTACTACCAGGTGCCGCCGGGCCAGGAAGA 2200 28 100.0 32 ............................ GCAACTACGCAACCGCCAACCCAGATCTATCG 2260 28 100.0 32 ............................ TGCCCGTAGACGCCACCACGGCACTCGTCCGC 2320 28 100.0 32 ............................ ATTGAGTTGATGCGTCAAAGGGTGGCCACTGT 2380 28 100.0 32 ............................ AACCCCCCAAGCAGGCCGACGAAGCCGACACT 2440 28 100.0 32 ............................ AAGCCCCCGCGCGAGTTCATGGCAACGCCTGA 2500 28 100.0 32 ............................ TACATGAGCGAGCTGATGGTTGACTGTGCCGC 2560 28 100.0 32 ............................ TCCCAGCGCTGATAGGGCCAAGTGGCCTTTTC 2620 28 100.0 32 ............................ TCCAGAGAATCCACGTCGGTCTTGAACAGATG 2680 28 100.0 32 ............................ ATCCCGTAACTGCTCACGGCCTGTCCTCCAGC 2740 28 100.0 32 ............................ ATTTGGCCTTTGTAGTTGACCCGAGCTGTATT 2800 28 100.0 32 ............................ TTCTGGTTGTTCCGGTAGAACTCGCCGACCGG 2860 28 100.0 32 ............................ CCACCACACCGGCGTTGCCTGCGCTCTGGGGC 2920 28 100.0 32 ............................ TTCCCGCTGTTTGACTTGGGTACGTCCATACA 2980 28 100.0 32 ............................ ATGTCGAAGGCGGCCGATCTCCTGCGAGTAGC 3040 28 100.0 32 ............................ GTTGTCGCTGATGATCTCGGTCTCATCGGTGA 3100 28 100.0 32 ............................ TGCTCGCCGGGTGCGAGCCGGTCGGTGTAGAG 3160 28 100.0 32 ............................ TGCCTAAAGTAAGACTCCTTCAGCTCCGCACC 3220 28 100.0 32 ............................ TCAATGTGTGCATCGTTTGCCGCCTCATCGCC 3280 28 100.0 32 ............................ TGCAAAATCAGCCGAAACCTGCGCCACACAAG 3340 28 100.0 32 ............................ TCACACGGACGTGCCGACACGAACAACGAGAC 3400 28 96.4 32 .......A.................... TGGGATACGGCCACCACGGCGGCGGCGCCTGC 3460 28 100.0 32 ............................ AACCTCGACAACCGCGCGAACCACTTTCCCGC 3520 28 92.9 0 ........................A..C | ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.4 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : GCCGGCTCGACCTGGAGCAGACCCTCAAGCGATACTGTCATCTCTACAATCACCACATCCCGCAGAAGGCGCTGGGGCATAAAGCACCCATACAGGCCATGCGGGAATGGCAAAAACGGCGGCCGGACCTATTCGTCAAAGAAATCAGGAATCACCCG # Right flank : CTGTGCCGTACGTGGCAGACCGCTATGCTTGCGGGCAGCCACGGTCGGAGAATACGGTGGTGGTTCAGACGCAAGGGGTGGTGGTGAAGGTCTTCCTGCCTCGAATGTATGAGCGGCTCCGGGCCGGAAATCCCTTTCCCAGGCGGCAAACCCTTTCGCGGCCCGGAACCGCTCCTACAAGTGGGGTGTCTTGTCAGGCCGCCAACCCGCTATGCCGCAGCAGCGCATCGATGCTCGGCTTGCGCCCGCGGAAGGCCACGAACAGATCCATGGCCGGTTTCGAGCCGCCCTGCTCCAGCACCTGGCGCAGGAAATCCCGCCCGGTCTCGCGGTTGAAGATCCCTTCCTCCTCGAAGCGTGAGTAGGCATCCGCCGAGAGCACCTCGGCCCACTTGTAGCTGTAATAGCCCGCCGCGTAACCGCCGGCGAAGATGTGGCCGAAGCTGTTGGGGAAGCGGTTGAAGGCGGGCGGCTTCATCACTGCCACCTGATCGCGTACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 151058-151985 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEIF01000007.1 Alkalilimnicola sp. S0819 S0819_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 151058 28 100.0 32 ............................ AGCGCCTGACCGCGCTTGGAACGCTGGACCTG 151118 28 100.0 32 ............................ GTTGGCGCTCAGCTCTATGTTTTTGAGCTGGG 151178 28 100.0 32 ............................ ACTCGAAAAGCGTTCGGGTGCTAACCCCTAGC 151238 28 100.0 32 ............................ AAGGAGGCACCATGAGCGTACTAGATACCATC 151298 28 100.0 32 ............................ TTCGCCACGGCGGGCCAGCAGGAAATCGACTC 151358 28 100.0 32 ............................ TTGCCCGAATTGTGCGCAGCGGCCAGCGCTCG 151418 28 100.0 32 ............................ CTCGGGGCGGGCCGGGAAATTGATTCCTGCAA 151478 28 100.0 32 ............................ ACGCCTAGCATCAATCCACCCGCAGCCCCGCC 151538 28 100.0 32 ............................ ATAAAAGGCGTTAGAACCCGCTCGTATGGGTT 151598 28 100.0 32 ............................ AGAGGGCGCTGGTGGCGCACGCTAACGACTGC 151658 28 100.0 32 ............................ ATGGGCGGTTACGTGGTCTCCGTCGTTGTCGG 151718 28 100.0 32 ............................ AGCGCCCGCCGATCCGGTGCTTGATACAGAAA 151778 28 100.0 32 ............................ ACAGAAAACGGCCTACACCTATCGCCAGATTA 151838 28 100.0 32 ............................ ACCAGCTCGTCAAACCAGTTCGCTTCGATGTA 151898 28 100.0 32 ............................ TGTAGATATTCCAGCTGACCCGCCTCCCATCG 151958 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGGCTGAAGGAGCTTATGGCGCTGAACTGGCTGAGCGGTATGCATGACCACATTCAGCTCGGAGACATTGGTGATGTTCCGGCGGATGCGCCGCACCGCCAGGTCCGGCGGGTACAGCCGAAGACGAATGCGGCGCGGTTGCGGCGTCGTTATATAAAACGTCATCAGGTGTCGGAGCTAGAGGCTGCTGAGCGTATCCCGGACAGTGTGGAGCGCTCGGTGAGCCTGCCTTTCGTGACTGTGCGTAGTCGCAGCACGGGGCAGTCTTTTTGTCTTTTCCTCAAGCAAGGGGATGTGGGCGTTGCTCCGAGGGCGGGCGTCTTTAGTCGGTATGGATTGTCTGCGGAAGCGACCGTGCCATGGTTTTGACCCTTTTTTGCGGGCTGCAAAAAGTTTTTCGTTGAAACAGTGAGTTAGGTCCGCCCCTCGAGAGGAGGGGCGGGCGGCTGTGCGGTTTAAATAGTTCTTTAAAATCAGGGACAACGGTTTATTTTGGTCTA # Right flank : GGGAAACGCTGAACAAACCAGCGCCACAGCATCAATTGTTCGAAAAATGACCGCCTCGACCTATTTCGGCCGTCAAAACGGCGTTTCAGCGTCTTTCTGCCCCGTATCCGCCTCGTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //