Array 1 92513-95105 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJYZ02000011.1 Klebsiella quasivariicola strain EuSCAPE_IL010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92513 29 100.0 32 ............................. AGTGATTTACGTTTTCCGGCCTCTCTGCGGCC 92574 29 100.0 32 ............................. TTGCCGCGAAACGCGCGGATTGATTCGTCGCT 92635 29 100.0 32 ............................. CAACGTCGAACGCTTTCGTTAAATCCTCAAAG 92696 29 100.0 32 ............................. TCTCCACTCATATTGCAACCAACATTTACAGA 92757 29 100.0 33 ............................. GTGTTCGCCTCCCGGCGTGCGATATCCATCCAC 92819 29 100.0 32 ............................. TCCGGGCATTCGTCGAGAAGACGAAAAAGAAT 92880 29 100.0 32 ............................. GTATAAAGACGCCGAAGGCTATTAGCGGGAAT 92941 29 100.0 32 ............................. CGTAGCCTCCATCTGGTCGTAAATCTTGCGGG 93002 29 100.0 32 ............................. ATATTTTTTACCGGGATCTCGATACCCCAGCA 93063 29 100.0 32 ............................. TCCAGCCCTTCCGGTGTGATGTCCCACTCTGA 93124 29 100.0 32 ............................. GGTAACCGGGTCGTCGTCCAGGTCCTCGTCGG 93185 29 100.0 32 ............................. GTTGTGATAGAAACACCTTTTGTTAATGGGGA 93246 29 100.0 32 ............................. GTAGCGATGTGCTGGCGCAACTCCGGCAGCTT 93307 29 100.0 32 ............................. CTGTTTCATCCGCGCATTGACACGGAGCTGCA 93368 29 100.0 32 ............................. CGCCTCTAAATATTATAGTATCGCAGACGTCA 93429 29 100.0 32 ............................. GTCACTGGCCGCGCTATTTCCGGGGGTAAGCT 93490 29 100.0 32 ............................. GCGATCTCTTTTGTGCGGGGCGCCGACGCTGC 93551 29 100.0 33 ............................. TATCGGGCGGACCAGGCCACCCCCGTCGCCCGC 93613 29 100.0 32 ............................. TGTACCGCGTCAAGCCCGTTTTCGCGAATATC 93674 29 100.0 32 ............................. GTCGAAAGCCCGAATGGCGATATCGACGCTAT 93735 29 100.0 32 ............................. CCGGGATGACAAGTTCCGGCCCATTGAACCCG 93796 29 100.0 32 ............................. GAAGCTGAAGATATAGCAGTCGACGGGGCTGT 93857 29 100.0 32 ............................. CCGTGATCATCTCCCGCGGGGAAATGGTCGGA 93918 29 100.0 32 ............................. AGCAATAGCAATGGCCTGCGCCTTAATTAACG 93979 29 100.0 32 ............................. CCATTTTTAGTAGCAATAACCTGCAATGACAG 94040 29 100.0 32 ............................. AGTTTGTTCGTCGCATTAATGGCGTGAACGTT 94101 29 100.0 32 ............................. AATGCGCCGGCCGAGGTGCTGGTGCGCGAGGT 94162 29 96.6 32 ............................A CCGTTATCAGCCAGGATACCAGGTTCTCACGC 94223 29 100.0 32 ............................. GCAGATCACCAGCCTACAGGCCATCTTCCAGA 94284 29 100.0 32 ............................. CAGGCGGGGCAACCTCGACGCAGCGCGCCGGA 94345 29 100.0 32 ............................. GTTTGGATCTTGTCGCCGTAGCCGGGCCAGTT 94406 29 100.0 32 ............................. GCGGGCATCTCTCGTGCCGGTCGCACCGCGCC 94467 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 94528 29 100.0 32 ............................. CCTCGTCTCCAACCGGCTGCTCGTTGAAGTTG 94589 29 96.6 32 ............T................ GATCAGATGTACCCCATCTTCAGTTGGGGATG 94650 29 100.0 32 ............................. AGTCAAGACCGGTACCGCGGCGGATATCCTGA 94711 29 100.0 32 ............................. GCGGTTACGTTGTGCTGGATATCTCCCTGAAA 94772 29 100.0 32 ............................. AGGGGCTGACACGTGCCGGCCAACTGTCCCCC 94833 29 100.0 32 ............................. AATACAACGACGTCCTGACGGATAAAGGGATG 94894 29 100.0 32 ............................. GAATGGTCACAATTCAAGGGGGTGCTGGCGCT 94955 29 100.0 32 ............................. TTAACGGACAGACGTTGCTCAACGTAGTCCGA 95016 29 100.0 32 ............................. TTAACGGACAGACGTTGCTCAACGTAGTCCGA 95077 29 93.1 0 .........................G..T | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACCTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTTAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : TGCCACTAACTTCATCGAGCCTTATGGTGAGGACGAAAGACGACTGAAAATAAGTATCACTACCTGCCGCTCTTTAACGGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGAGCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGGCCCCCGGTTGTAATAGGGCCATGAATACCCGCCACCATACAGCGTAAAATCGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 325419-324476 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJYZ02000001.1 Klebsiella quasivariicola strain EuSCAPE_IL010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 325418 28 100.0 33 ............................ CGGGTGAACTCCCCCCGCAGGTGGAGGTGTTTG 325357 28 100.0 33 ............................ CTCCCCCCGCAGGTGGAGGTGTTTGGGCAGCTT 325296 28 100.0 33 ............................ TTTGCTGGTCCGCAGCGCGGTCGCGGTTGGGGG 325235 28 100.0 33 ............................ CTTTTGATCTTCGCACCATTTTTCAACGGCTTT 325174 28 100.0 33 ............................ TAACCCCGGTTTGATCCAGTTTTTCAACCAGCC 325113 28 100.0 33 ............................ CAGACCTCTTCGTCCACCTCGACCGCCCTACAG 325052 28 100.0 33 ............................ TATCGCCCGGGCTCGCAGGCGCAGGACTATATC 324991 28 100.0 33 ............................ CAGATCCCACCAGATTTCCCGCAGCTCACTAAG 324930 28 100.0 33 ............................ TGTGGATTCATATGCTTTAGCAGGATATGCGCA 324869 28 100.0 33 ............................ CATCAGCAGAGAACCCGAGCGTAGACAGGCATT 324808 28 100.0 33 ............................ TATTGTTCGCGGCAAGTGTCATACGACCTGGTA 324747 28 100.0 33 ............................ TCATCCTTAACGGGTCGATGATTGAGCCTGTGA 324686 28 100.0 33 ............................ CCAGCCATCGGCAAAGCATATCGCGCGACCGTG 324625 28 100.0 33 ............................ CTCGCGCGCCGCTGCGGGCTGATCACGGCCAGC 324564 28 100.0 33 ............................ CAAAGAGGGGATCTGTTACGAGCTGCGCGACTA 324503 28 71.4 0 ........T.....T......C.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TATATAAAGAACGACTCTGTATCGATCTGGCTTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTTATTGCCGCCGATATCAATGAGCTAATGGGAGGAAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTGTTCGTCTCAGGCGTCAAAGATTCGGTTGCACAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCGGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : ATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATGATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAGTATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACCGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGGCTTTACCAGTCACATGATTTAATACGCCAGTTAAAACCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGTGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTCTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 334718-334081 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJYZ02000001.1 Klebsiella quasivariicola strain EuSCAPE_IL010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 334717 28 100.0 33 ............................ TGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 334656 28 100.0 33 ............................ CCAGTCGCCAGGAACAAACTGTTCAACGGTTAC 334595 28 100.0 34 ............................ TTATTATCTGCCGGTCGAATCCTCATATTTAGAG 334533 28 100.0 33 ............................ TACATCTGGCGCGAGAATAAGAAAGGCAACCCC 334472 28 100.0 33 ............................ TTGCTCTTGCCACAGCCGCGCCACGTTTATTTT 334411 28 100.0 33 ............................ CGGCCGGCCCTCTATGATCCATATTTTTGAACC 334350 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 334289 28 100.0 33 ............................ TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 334228 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 334167 27 92.9 33 .............A.......-...... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 334107 27 82.1 0 ............C.T......C-.A... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 97.4 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : AACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1059-423 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJYZ02000076.1 Klebsiella quasivariicola strain EuSCAPE_IL010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1058 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 997 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 936 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 875 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 814 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 753 28 89.7 32 .....-......TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 693 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 633 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 572 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 511 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 450 28 93.1 0 .......................-....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.6 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //