Array 1 97828-99808 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNS01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM3603 BCW_8429_1__paired__contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 97828 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 97889 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 97950 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 98011 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 98072 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 98133 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 98194 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 98255 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 98316 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 98377 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 98438 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 98499 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 98560 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 98621 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 98682 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 98743 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 98804 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 98865 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 98926 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 98987 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 99048 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 99109 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 99170 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 99231 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 99293 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 99354 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 99415 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 99476 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 99537 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99598 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 99659 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 99720 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 99781 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 115941-117417 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNS01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 KO_STM3603 BCW_8429_1__paired__contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 115941 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 116002 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 116063 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 116124 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 116186 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 116247 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 116308 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 116369 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 116430 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 116491 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 116552 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 116613 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 116674 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 116735 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 116796 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 116857 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 116919 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117022 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117083 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117144 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117205 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117266 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 117327 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 117388 29 96.6 0 A............................ | A [117414] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //