Array 1 304267-303184 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLG01000001.1 Neisseria lactamica strain M37119 M37119_HUY4067A177_cleaned_ctg_7927, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 304266 32 100.0 34 ................................ TTGCCTTCGATTTGTCCGTTGAATTTTTTAACGC 304200 32 100.0 34 ................................ AGGAACACGACCGACCGGTGCAGGCTTTGTTGGA 304134 32 100.0 33 ................................ AGCGGCAAACCGAAAGTTTCATACTCTTTCGCG 304069 32 100.0 33 ................................ AGATTATAGGGGGCATAAATTCAAGTCGGTTAA 304004 32 100.0 33 ................................ TTGACATATCGGATTTAAATTTAAAAGACCCTG 303939 32 100.0 33 ................................ GACGCATCCCGCGTCGTCCCCACCGCCGACGAA 303874 32 100.0 33 ................................ CAAGACTGGATATTTGAAGAGGTTATCCCTCAA 303809 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 303743 32 100.0 35 ................................ AAGCATTGGGAAATGCGGCTGACGGATTTTTTTCA 303676 32 100.0 33 ................................ CTGGGCATTAACCTCCACTATCTACCAATCAAG 303611 32 100.0 35 ................................ TGTACCCCCCCTGTTAGATAAGGGGGGAAGATTTG 303544 32 100.0 33 ................................ AGAACAACAAAGGAGGATTTGAACAATTAATAA 303479 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 303413 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 303346 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 303280 32 100.0 33 ................................ ATTAAAAAACTTTTTTCGCGGTATGCTTCGGGT 303215 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ =================================== ================== 17 32 99.6 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCTGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACCGAATTATGGCGGCATCGCCTTATTGCCCTTACTTTTGGCATCTTGTATCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCGAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCTCCTGCCAAACCCTCTATAGAAACCACGCCGGTCAATCAACCCGCCGTCGGTGCGGCAATGCGGCTGCCAAGGCGGAATATTGCTTTTTATAACAAAGACGGTACAGAAATTCCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4238-3674 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQLG01000004.1 Neisseria lactamica strain M37119 M37119_HUY4067A177_cleaned_ctg_7933, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4237 36 100.0 30 .................................... AACAAATCTTTATTTCACAAGCAGTTCGAT 4171 36 100.0 30 .................................... TCTTTTTTTTCTTCTTCGGGCATCTCTCCG 4105 36 100.0 30 .................................... CATCGCCGGCGGAAAAATCAAATTAAGCCT 4039 36 100.0 30 .................................... CGCAGCCGTAGGCAGGCTGTTTCAGCGGTA 3973 36 100.0 30 .................................... TACAAATCTTTCTGGACGTCCTCCCCCTGC 3907 36 100.0 30 .................................... ATTTGCAAGCTAACCTGACCACAATCAAAA 3841 36 100.0 30 .................................... GCGAATTAACATCATAAAGTCATTGACAAG 3775 36 100.0 30 .................................... AAATTCAATCTGACGCAATTCTAGACGCAC 3709 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGATGCGGCAAAATAGAAAACCGCCCTTAATCGGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCCAGCATCAATCGTAACAGTCAATTGCAAAGTACCTACGCTAATAGAGATTTGCATTTTGATGTTTCCTGTGAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTCTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : ACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAATAATAGTTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGCAGGTTTGCACACAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //