Array 1 464436-464125 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYPR01000020.1 Rhodobacter capsulatus DE442 seq0020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 464435 37 100.0 32 ..................................... CCTTTCGGCATCGTAGAACCTCTTGTTTAGGT 464366 37 97.3 31 .......G............................. GAAGCCGTTGATTTTCATCGGTCTCTCCTGT 464298 37 97.3 33 ..A.................................. TGATGGTCGCCAGCGGTTTGGTATGCTGGGAGA 464228 37 100.0 30 ..................................... CATGATGTTCCTTTCTTGGGTATGGGGTAA 464161 37 75.7 0 ....................T........GAACCCAA | ========== ====== ====== ====== ===================================== ================================= ================== 5 37 94.1 32 GCCTCACATCACCGCCAAGACGACGGCGGACTGAACC # Left flank : TAGGATCGCTTGACAGATGAGCGGGCAGCTCCTTGCGGTTCTTGCCATCGGTGCTGATCTTGCGTTTGAGCCCCCCCGCCGGATCGCCGAATTCGCTGATCGTCCGCCCTTGAACCTTGCCAATCTGCATTGTCGCGCCCCCAGCACAAAACCCACCAAGGCAAGGATGCAAGCCGTCAAGCCCATTCGCAACAGTTCCGTTGGGCCGGGCCGATTTGCCGCACCATCTGCCCGGTTTTCGACGTTCGGGGCGCGACAAAGCCTGTAGCCATCGCATCGGACTTCGCCTAGGCTTGCCGAAACCCGCCGCCTGCAGCGGCATCGGGTCGGAAATTCGGCAAGGAGGGTTCAGAAAACGCGCAATACACTGACACGGAAAGAGTAATTGCCACTGGAGCGGCGCGGAAATGCAAAAAAGGTCTCAAAATACGGCCTTGATCGTCCAGGGTTCCGAAACCCTGCTTGAAGATCTTGGCGTCTCAATGGCTTGCGGGACCTGA # Right flank : TGCAAACGGAGGTGCGGCAACAGCAAGGTTGCACCGGCTGGACTTCGGCGGCAGTCTGGCGCAACGGGGCGCAGGACACGGAAGATGTGGCGGGGGCAAGATGGACCTGTTTTTCAAGGCCACGGAATATGAGACCCTGCAGGCCTCATGGCTCAAGGTCCAGCAAAACGGCGGCGCGGCGGGGGGTGACGGCGTCACCATCGCCACCTTTGCCCAAGGGGCCACCGCATCTCTGCGCGATCTTGCGCTGGCATTGCGCGCGGGCGGCTGGCAGCAAGGCCCCTGCCGCCGCGTCGACATTCCCAAGCGCAAGGGCGGCACTAGGCGGTTGATGATCCCGCCGATCGCCGACCGCATAATTCATGGGACCGCATAATTCATGGGGCAATCGCCGAAACGCTGGAGCCGATCCTGGATGCGACGTTCGAGATCGGTGAGGGTGTCCGGCCGGGTCGCCAGCAGGCGCTCGAACTCGCTGCGGACCGTCAGCTGGAAGCGCA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCACATCACCGCCAAGACGACGGCGGACTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 29005-29255 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYPR01000015.1 Rhodobacter capsulatus DE442 seq0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 29005 37 100.0 33 ..................................... GTCGATCCGGTCTCAAGCTGCGCCTGCGTCACG 29075 37 100.0 35 ..................................... ACGGGGGCGGCGGCGAGGCAGGCGAAGGCGGCGGC 29147 37 94.6 35 .......C.............A............... TGCGTCACCTCCGATCAGCGCGAGGATGCGATCAG 29219 37 83.8 0 .......C..............C.......G..C.TG | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 94.6 35 GCCCAGATACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : TGCACGCGATCGTTCCGGCCCTCCCGGGGCAGACCGATGCGGCGGGGCCGCCCGATGGCTGGCTGCAACTGCTGCAACTCTCGGTGCTGGTGGCGATCATCGCCGGGATCTGGGCTTTGGCCGAGCGGGTCTATTTCCGCGACAAGCGGTCCTTCTGGGGCTGGCTGGCCTATGGTGCGGCGGCGGCGGCCTTTGCGGGCAGCGAGGCGCTGCATCTGTGGCCCGCGCCTTGAGGGGCTGCGGCACCCTGTCTTGCATCCCGGAAACTTCGCGGTGGACAGGGGAAATTTCGCCTGCCAATCTGACCTTGACGGCGGGAAAGCCGGGCCAAAAGGCCGATTCACTGTTGGAAAACCTGCCATGACCTTGAAAATCAAGGATAAAGGAGGAAAAACACGCGCAAAAACCGGGCTTGCAAGGGCTGTTTCGGGGCGTCGGGCACATCACGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTGA # Right flank : GGGGTGTCGGTGTATGGGCCCGCCTGCGTGCGGATGTGGCGTGGTGACGCATCCTTGACGGCTGAAACATCAGGGCTTGCCGGGAATCATTCCTGCCCCTCTCATGTCCCCATTCATGCAGGGGGGCAGGATGTTCCTTTATCTCGAGGGCGTGAATCTTTACGCCACGATTTACGATACCGAAGACCTTTCCACGATCCGCGGCGGCTCGATGGCGCTGGAAACTCTGGCGCAGCGGGCGCAGGCGGCGCTTGGCGGCACGCTGCGCGGGCAAGGCGCCTCGATAGCGCTGTTGGAGTTTTCCGGCCCGCCCCCCGAGGAGGACAAGATCCGCGCCTTTCTGAGCGCCACGCCGCAATGCCATTTCACCCTCACCTGGGGCACGGGCGAGACCGAGGCGCAGGCGATCAAGGCGGCGCGAGACCGGCAGTTTTCGCAGCTTGCCACGGTGGTGCTGCCTGCGATCATGGCGGGGGTGCGCCCCTGTGCGATCGATCACA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGATACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 35753-35928 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYPR01000015.1 Rhodobacter capsulatus DE442 seq0016, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 35753 37 100.0 32 ..................................... ACCCAGAACAGGTGTTTGAGCGGCCCACCCGC 35822 37 100.0 33 ..................................... GAATGACAGCAACGTACAGCATCGTTTGCCTTT 35892 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 100.0 33 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : CAGCGCCGCCGCGCGCTGCTCGCTCAGCCGCGCCTCGAAGACCGAATATTGCACCCGCGTCGCGGCCCCTTCCAAAATCCGCGCCACCCGACGCCGCTTGCGGTCTTGCGACACGTCATAGGTGAAGACCATCAGCATCTCGGCGCGCGGCATGGCAGACCCTTTTCGGTGCAGATTTCGGGCCTCAGTCTGCCGCGAAACGGGGGGCTGCGAAAGCCCTTGCCGGGCGGGCGGCCCTGCGGCGGTCTGTCGTGGCGCGGGGCAATCTTGACGGTGGACAGGACGGATTTCGCCTGCCAGTTTGAACTTGAGAGGCGGAAAATCGGGCAAAATCGCCGATTCACCGTTGGAAACCCTGCCATGACCTTGAAGTCACAGGATAAAGGAGGAAAAACACGCAGCAAAACCGGGCTTGCAAGGGCTGTTTCGGAGTGTCGGGCACATCACGGTTGGAAAGCGGACCAGAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : CATGCCCTATTCAACGAGGGCGGCGCCACGGGACGGCAATCCTTGGCGAGTTCAGTAGTCCTGCAGCTGCGGCAGGTAGGGGACCGTTTCCGGGCTGCGGCAGTGGCGGGCGAGCGCGCGGGCCTCTTCGAGCATGATCCGGCGCAGGGCGTGGCGCTGTCCGGTCTGGCTGGAGCGGATCACCCGTTCCAGCGCCTCCTCGTAGCCGGTGATCAGCGCGCGCCGACCGGGGGTGAGGAGGCGCAGGCTGTCGCCCTGCGGCTCGAACATCTCCTCGCGCAGGCGGCGGCGGTTGAAGAGGCTCACCGCCAGCCCCTCGGAGAGGGTGGCGCGGAACACCTCCATCAGGTCATAGACGGCGGCGTCGCCCCGGTCCTGCGCCTGATGCAGCACGCCAAAGCCGGGGTGCAGCCCCGCGCCGATCAGCGCGGCGCGGATGTCGCGGGCCAAAAGCGCGGTCAGGTAATTGATCGCGGCGTTGAGGGGCGTTTTCGCCGGGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 38101-38423 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYPR01000015.1 Rhodobacter capsulatus DE442 seq0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 38101 37 100.0 34 ..................................... TCTTCCATCGAGCACTTGCAACCAAACACCCCGT 38172 37 100.0 34 ..................................... CTCCTTTCTCCACCCCGCGGGGTGTGCGCACGTG 38243 37 100.0 37 ..................................... GGGCGTATTCACGGCCCACCAACGCCCCCCATGCGGT 38317 37 100.0 34 ..................................... GGAAGATTTTCGGTCATCTTACGCGATCCGCATA 38388 36 81.1 0 ..................T.CA.......G.C-..C. | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 96.2 35 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : GGTAGCCGTAGCTGTCGGGGGAAAACAGCGGCTCGAGCCGGGGGTCAGCGCGGCGGCGACGGCGGTTTGCACGATCCGGTCGGAGACGGCGGGGATGGCGAGGCGACGGGTGCCGCCGTCGGGCTTGGGGATCTCATGCAGGCGCAGCGGCCGGGGTGCGTAATTTCCGTTGCGCAACAGCCCCGACAGCCGCGCGATCGCCGCCGCCCCCTTGGCGGCAAAGGCTGCGATGCTTTGCCCGTCGCCCCCCGCACATCCGTTGTTGCGCCGCACCTTTTCGAATGCCAAGGTGAGGGCATGGGGGTCGGAAATCTGGCCAAACAGGCCCGAAAATCGGCCTTCGTCGTTGGAAATCATGCCATGCCCCTGCGGGATAAGGGAAAAAGCGAGGTGAGAGACACAGGAAACCAGAAAATCGGGCCCGAGTCGAGGGATGCGGCACGTCACGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : CGAGGGGCGTCAGCCGCACCCTTCCCGCGCCGATGGTGGTGTCGGCGCCGATGTGCAGCGCCTCGGCCAGCGTGAGCAGGCGGCGCAGCTCGGGCGGGGGCGCGGAAAAGGCGATGCGGCCGGAAAAGCCCGGACGCGGTTTCGTGCCCCGCGCCAGCGCCCGCCGTTCGCCCGCAACGGCCGGGGGGGCGGCGCGCAGCGCCTCGGCCAGCTCCGCCTCGGGCAGATCGAGCGCAAAGCCGTGCCACTGCGCGATCCCCTTGGCGCGTTTGGCAAATCCTGTCAGCAGCGAGGCGGGATCGAGGCCCAGCCCCGCGTGATCGGCGCGCAGGCGCTGGATGATCGGGGTTTGCGTGCGCAAAGCCAGCGCCCCCGCAGGCGGGGGGGAAGCCGTCAGTTGCGCATGGGACACGGCGGTGATCTGCATCGGCACCCGGCCCGCGCGGCCCAGATCAAGGCCGCCGCGCAGCCCGGCAATCAGCGCGGCGCGAAACTCGGGC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 74818-79137 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYPR01000015.1 Rhodobacter capsulatus DE442 seq0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 74818 32 100.0 37 ................................ TGCACCCGCTGGCCCTGCCGGTGATCGGTGATCAGCG 74887 32 100.0 34 ................................ ATCGCCGCTTTGGCGGTCGACAGGCTGGTAACGT 74953 32 100.0 35 ................................ ATCTCGGTGCCGTCGCTCGTCCAGCCGGCCTGCTC 75020 32 100.0 34 ................................ CACCTTGCGGATTGTCACTTTCGCGGGGCGAAGC 75086 32 100.0 34 ................................ ATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCA 75152 32 100.0 33 ................................ TGGTATGGATCTGGCGCAAACGGAAAGTCTGTC 75217 32 100.0 36 ................................ CTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGAC 75285 32 100.0 35 ................................ TGCGCCGCCTATCGCATCCGGTCGAGCGCCGCGCA 75352 32 100.0 34 ................................ GATGCGTTCATGGCCTACGTCGGGCAGTGGACTG 75418 32 100.0 35 ................................ TCGCCCTCGATCCGCGCTTGCCTCACGCCTGCCGC 75485 32 100.0 35 ................................ AGGCGCATCTGATGTATATGCCCGGTGAGACGGCT 75552 32 100.0 36 ................................ TTTTCGTCATCTGGCAGGCTCGCGCCGCCACGCTGC 75620 32 100.0 36 ................................ CCGGCGAAAAACGGCCATGCCTCCGGGTGTCTGGCT 75688 32 100.0 35 ................................ AGCAGGTCAGCCGCGGCCCCGGTGAACTTCTGTTC 75755 32 100.0 36 ................................ AAGCAGTGGGGTGAGTGGGCTGACCAGACAAACGCT 75823 32 100.0 36 ................................ CGCGCCCTGCGGGTGATGGCGACGGGCACCACGGCG 75891 32 100.0 37 ................................ GGACCTGAAATTCCGCGGGAAACGCGGCGGCGAGCAC 75960 32 100.0 34 ................................ TGCTTTCGTGGGACTGGCCAGCCGCCCGCGCCAA 76026 32 100.0 34 ................................ GATTTCGTCGCTTACGACGCCTATCTGATTTCGG 76092 32 100.0 35 ................................ CATGCGGCGATAACTCGCTCTTGCGATCCGTCATC 76159 32 100.0 33 ................................ CCTGTCCCTCATATGCTGCCACGATGCCCTTGA 76224 32 100.0 33 ................................ CGTGTGGATGATCATGCAGCGCGGACGGCTTGG 76289 32 100.0 35 ................................ CGGTCCAGAGATAGACCGCGCGGACCTCCTCAGAC 76356 32 100.0 34 ................................ AGCCTGCGCGGCCGCATCGGCTTCCGCCTGCGTG 76422 32 100.0 33 ................................ ATCAGCTCGTCGTTGGTCAGCCGGACGATGTCC 76487 32 100.0 34 ................................ TGCCGTCTTGAGTGATGGGGCGCGAGCACATGTC 76553 32 100.0 35 ................................ GTCCAGCTCGCGCCACATGTCTTCGACCGTGCGCC 76620 32 100.0 35 ................................ GTGTCTGCCACGACGCCCTGCACCAGATCCGCGCC 76687 32 100.0 35 ................................ ACCGCGCACGCGCGAACGGCGTCAGCCCCGCGAAC 76754 32 96.9 35 .................A.............. GGCTTTACAGCCTTCGCGCCCCACGCCAGACGGAC 76821 32 100.0 34 ................................ TCTTCAATGGATATGGCAAAACCGTCCGCGACAT 76887 32 100.0 34 ................................ ACCGTCATCACCACGCAACCGCCCTGCACCACCG 76953 32 100.0 35 ................................ AACCCGATCATGGCCCGCCTCAGCGCCGCGCTGAC 77020 32 100.0 34 ................................ ATCCGCGGATCGGCGTGACCCGCCCCGCCCATCG 77086 32 100.0 35 ................................ TACAGAGTTCCGGTCTTGTTCTGTTCCGGTAACAG 77153 32 100.0 34 ................................ TTGTCTGACGCGCTCATCAGCACGTCAAGATTCA 77219 32 100.0 36 ................................ TCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTG 77287 32 100.0 35 ................................ ACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGAT 77354 32 100.0 34 ................................ TATGCTGGCTCGACCGAGTTCACGGCGGGCTATC 77420 32 100.0 36 ................................ GGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC 77488 32 100.0 36 ................................ GCTGCTGACACCGCCAACAAATATGTGGTCAACACT 77556 32 100.0 35 ................................ GCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCG 77623 32 100.0 36 ................................ TCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTG 77691 32 100.0 35 ................................ TTGATGACCAGATCCGCAATCGGCCGGGCTCGATC 77758 32 100.0 36 ................................ CTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCG 77826 32 100.0 35 ................................ ATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC 77893 32 100.0 35 ................................ GGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGC 77960 32 100.0 35 ................................ ATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGC 78027 32 100.0 35 ................................ CCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCG 78094 32 100.0 34 ................................ AACTGACCCGGCAACGGCCTATGCGCTGGACGTG 78160 32 100.0 33 ................................ TACACCGGGGCTCTGGTCACGGTTTGGGACGGA 78225 32 100.0 35 ................................ AGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTAT 78292 32 96.9 35 .......A........................ TGTGCCGGTTCCCGGAGACGCTGGGGCCCTCGCAC 78359 32 100.0 35 ................................ AATGCGGCGCGGGCCTATGGCTGACGGACCCGCCC 78426 32 100.0 37 ................................ TGCGTGCGCGCCATGAATTCATCGAGCGCCATCGAGC 78495 32 100.0 36 ................................ ACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCG 78563 32 100.0 35 ................................ AAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGC 78630 32 100.0 38 ................................ CCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGC 78700 32 100.0 35 ................................ ACCCCGAACCTGTCGGCGGCGAACACCGATACCGC 78767 32 100.0 36 ................................ ATCGATGATCAAATCCGCAATCGGCCGGGCTCGATC 78835 32 100.0 38 ................................ GGTGTCCAGCGTCACATGCAGCGGCGTCGCATCGCCAT 78905 32 100.0 35 ................................ CCGGCACCTCAGCCCCGCCCGCTGTCTCACCAACA 78972 32 100.0 36 ................................ TCTATGGGAGGCTAGGGAGGCTACGCACCTTCAAAA 79040 32 100.0 34 ................................ CGCCGCGCAAAAAGCCCGCCAAGAAGCGGAGCAA 79106 32 93.8 0 ............................T..G | ========== ====== ====== ====== ================================ ====================================== ================== 65 32 99.8 35 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Left flank : TCGACGCCTATCCGCCCTGGTTCTGGAGTTGAGATGCTGGTTCTGGTCACCTACGATGTGAACACGCTCGAAGAGGGCGGCAAGAAGCGGCTGCGCCGGGTGGCGAAAGCCTGCGAGGATTTCGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAGGTGGACCCGGGGCAATGGGTGAAGCTGAAAGCGCGGCTGGAAGCGGTCATCCGGCCGGAGTTTGACAGTCTGAGGTATTATTATCTGGGGTCGAACTGGGAGCGGAACGTTGAACATGTCGGCGCCAAGCCTGCGCTTGACCTGAACGGCCCGTTGATCCTCTGATCTGCGAACCCCAAGGGTGTGGCCGTTTCCCACCCGGTTCGCACCGCGTCAGCTCTTTGAAATTGTGGATGAAGCACCGGAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCA # Right flank : GCGGTGCATCGGCCCGATAAACCCCGATTTTCGGCCCCTGAGGGGAAAGATTCTTGGCACAATTCCGCGCCCGGGGTCGAATCGGGCGATGATCGGAACGGTGGTGGAGGTGGGCGCGGACCGGCTGAACGCCTGGTTCGGGACCGCTGCCGCGGGTCGCTGATACCGCGCCCAGCTCTCATACGGGGCGATGGCGATGATGCTCCTGCGGACCTGACGGGATGCCGGACCGCCTGCGGCGCTCAGGATGTGACGGAGTTGGGGAGCGAGAACCGGCTACGGTCGGTTCGAGACCAGTGTCGCGGACTGTCGCCACGCGGATGCCGCCCCCCTCGGCCCTCATACGGGACGATGGCGGTGCTGTTCCTGCGGACCGGACGGGGTGTCGGCCTGCCTGCGGGTCGCAAAACGGAATGGAAATGAGCGCGACCGGCGTGCGCCTCGAACGCGAGGCCCTGCGGTGGGCGCGGCGGCGGTCAAATGTGTCGGGGAGCGTGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 115419-115779 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYPR01000015.1 Rhodobacter capsulatus DE442 seq0016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 115419 32 100.0 33 ................................ GTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT 115484 32 100.0 34 ................................ ACGGATTGCATGGCGCCGAGGGACAGGCTTTGCA 115550 32 100.0 34 ................................ CGCCCGCGGCGTTTGACCTGGTCGCGGGCAGCTG 115616 32 100.0 35 ................................ GACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTT 115683 32 100.0 33 ................................ ATGGAAAACCGCGGCTTCACCGCGCGGGATTGG 115748 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 100.0 34 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Left flank : CAGCGATATCTCGGCGTCGCCGATCCGGATCTGACAGGCGGCCGCGTCAGCGGCGCCTTTCTGCTTCGCTTGGCGCGCCGGTTCCGAAGGGACCATCACCTCGACGAACTGCGGAGACTTGCCCTGCGAAGCAGCCTTTCCCTGCGGCCTCCCCCGGCGCGGCAGCTCGGGCAATTCGGCGCGCGCCCATTTCGCGACTAGGGACTCATTGGCGCCGATCTCCTTGGCGACGGTGACGATCTTGGTGCCGGCCTCGATCTTCTTCACCGCCATCGCCTTGATCTCATCGGGCCAGACTCGACGCCCGTTGTCGGCGGTGATCACCGGGATTCCCCAGACCACCACATCGCCGCCCTCCTTCTCGTCCAACATCTCGACCTCCTTCGAACAGAGAGAGGGCGATCATCGCAAAACCCTTATTTCATTGGAACATGGGGTATATGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGG # Right flank : CCGTGATGCGTGCCCGATCCATCGGGTTTCGCGGCCGATGCGGCTCCCGAAGTGATCAAGGCTGGTGCGCGCAAATCCATCGAGCCAATCGGGCGCCCAACGATCCGCCGCGACATGTCCGAAAATCGGACGCTCTGATTGCGAAAACTCGGCTATCCTGTTGCGGTCTTCCAGCTGCCTGCACACTGTGCCGGCCTATGGAACGGGAGATCCATGGACCGGGAGACCGCTATCGACAGCAGATCGGCCATTCGTTCGGGGGAGGAGCAGATGGCACACCGTATCAGAAAGCGCGGCTGGGAGGAGTTCATGGCGGTTGGCCGCGCGTCTCCGGATGTCCGCAGCGAAGTTTTGCAGAGTTGGCAGCGGTCCGCGGGGCGACGGATCGAAAAGCTGAAACAAGCGCCGCTCCTGAGCGAGGAGGACTTGCTGACGCAGAGGGCGCAGGCGCGCCGCCTGCGGTCCGGCGCGCGCGGGGTTCTGAACAGGGCAGGAAGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //