Array 1 10311-16046 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCTC01000130.1 Azohydromonas lata NBRC 102462, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10311 28 100.0 32 ............................ ACCGTCGTGATCCATCTGCAACTGCAGAAAGA 10371 28 100.0 32 ............................ ACCACGCGCGCATTGATGACGCGGCCGGCCTC 10431 28 100.0 32 ............................ ACTACAACGGCATCCTGTTCAACTGCGTGTCC 10491 28 100.0 32 ............................ CTTTGCGTTCGCGGTTGCGCCGGGGTCGACGA 10551 28 100.0 32 ............................ ACCAGCGGACTGCAGAACCGCCAGCTTTGCGC 10611 28 100.0 32 ............................ ACCTGCTCAAGCCGTTCGCGCGCTGCGCCGCG 10671 28 100.0 32 ............................ AGCGAAACTGGATGACGTTCGGCGATGGGAAT 10731 28 100.0 32 ............................ ACGCTGAGCGCGCCGAGCATCCCGCCGTCGGC 10791 28 100.0 32 ............................ AAGATAACGGCATCACGTCGTGGTGTCTGCGC 10851 28 100.0 32 ............................ TGCAGCCGAGGATTTCTGAAGCCAGGCTGTCC 10911 28 100.0 32 ............................ AGCACGGGGGGATTGGCCGGCTGCTCCAGGGC 10971 28 100.0 32 ............................ AAAGCGAGCCGCTGGCCAAGCCGGTCGTCGCA 11031 28 100.0 32 ............................ AACTCCACATAGTTCGGGTCTGGCTCAGTTGC 11091 28 100.0 32 ............................ TCGGTTCTCGCGCTCCATCTGCGTGAACAGCT 11151 28 100.0 32 ............................ ACCGCCGCGATGGAGGCCGCCGAGCAGCTCAC 11211 28 100.0 32 ............................ TCAATCCATGTTCCTATAACAGTGCCCAATAC 11271 28 100.0 32 ............................ AGCAGGTCAAGCTGGGCCACGGTGCCCGCCTC 11331 28 100.0 32 ............................ TGGCTGTACGTGGTCGGCGTTCCGCGCGAGGC 11391 28 100.0 32 ............................ AGTTCGTCACGAAAGACCCGGACGCCGCGCGC 11451 28 100.0 32 ............................ CTGGCCGGCGCCGCTCCAGCAGCGGCGCAGCC 11511 28 100.0 32 ............................ ATGGCGTGCTCTGCGTCAGTCCAGGATGCGCT 11571 28 100.0 32 ............................ ACGGCGGCGCAGCCCGCCCGCTCTCTCACGGA 11631 28 100.0 32 ............................ AGTTGGGCAGCAGGTCCTGTCCCTCCAGGTGG 11691 28 100.0 32 ............................ TGGCGGCGGCCGGCGTAAGGGCCGCGCGCTCC 11751 28 100.0 32 ............................ AATCGCGGCGTGGCTCTACACGGTGGACGGCG 11811 28 100.0 32 ............................ ATGCGGGCCATGCGGCAGCGCCGCGCCGCAAT 11871 28 100.0 32 ............................ TGGCTGAGCGCGGCGGCCTGAGTCCGCGGGAG 11931 28 100.0 32 ............................ AGCGACCTTTGCCACGCGCTTCAGGCGCGCCA 11991 28 100.0 32 ............................ ACCGATTACTGCCGTTCTCTGACAACAGGAAC 12051 28 100.0 32 ............................ ATCTGCTCGTAGTAGGCGCGCGCCTCCTGCGC 12111 28 100.0 32 ............................ AACCCGCCGGACCGGCCGGCGCCGCGATGACG 12171 28 100.0 32 ............................ ACCCATGCCATGCCGTCCAGCTCGCGCATCAC 12231 28 100.0 32 ............................ TTTCGAAAGCGTGCTTGAGCAGGCGGATCGTG 12291 28 100.0 32 ............................ TTGCTGCGCGACGCGCGCAGCCTCGTGCGCGA 12351 28 100.0 32 ............................ AGCACGGCAGCGGCTGCCTTCGTTTGCGGAAC 12411 28 100.0 32 ............................ CTTGCCCTCGCCGGGGAAGCCGGCCCGGTAGT 12471 28 100.0 32 ............................ TCGGTGGACAGCGCACGCACGCGCAGTTCGGC 12531 28 100.0 32 ............................ CGGACACGGAAGTGCAGCGCGAGGACACGATG 12591 28 100.0 32 ............................ TCCAGCGCCTTGATGGCGTCGGCGGCCGGCAT 12651 28 100.0 32 ............................ ATGGGGCCGCGCGGTGTGCTGTTCATGGCCAG 12711 28 100.0 32 ............................ ATCGCATACCCTTCGGAGCGCCAGAGCACGCG 12771 28 96.4 32 .G.......................... ACGGTGCGCTTGGCCGCAGCCTTCTTCATCTC 12831 28 100.0 33 ............................ CTGGAAGAGCTGGGCGGGGCCTCCCTGGAGCGC 12892 28 100.0 32 ............................ AACATCGGCGCGCTGCTGAAGGAGTACGCGGC 12952 28 100.0 32 ............................ TGGGTGGATGCCCTGGCCGGTGCCGGCCCGGC 13012 28 100.0 32 ............................ TTTCAGCGCATTACGCATGCGGATTTGAGGCT 13072 28 100.0 32 ............................ TGTTCGATGGCGCCACGGTCAAGGTGAAAACC 13132 28 100.0 32 ............................ ATGTAAAAGGGGCGGCCGTTGGCTTTGCCGGT 13192 28 100.0 32 ............................ TACGCCACGCGCGACCCGCAAGCCATCGCGGC 13252 28 100.0 33 ............................ GCTCGAAAATGATCTGGTCATACGTCGGCGAAT 13313 28 100.0 32 ............................ TGTCGAACGACGGCTTCAACGCGATCCTCAAC 13373 28 100.0 32 ............................ AGCTGCGCATCGACGGCACGACCATCATCGAA 13433 28 100.0 32 ............................ GCCGTCGCGCTGTGGTTGTGGCTGCCGCTGCT 13493 28 100.0 32 ............................ GAGTACGCCAGCGGGGGCACGTATGCCACGCT 13553 28 100.0 32 ............................ ACTGCTGCGGCCTGCGCGAGCACCGGCACCGC 13613 28 100.0 32 ............................ TAGGCGTAGGCAGCCTACGGCTACCGCTACAG 13673 28 100.0 32 ............................ AGGCAACGTTTCCGGCCCGGTCCTCGAAGTAA 13733 28 100.0 33 ............................ ATATCCGCAAGCTGCTGAACACCACGCAGGGTT 13794 28 100.0 32 ............................ TTCTCGCGCAGCAGGGCCAGCAGCCGCTCCTT 13854 28 100.0 33 ............................ ACGCGCAGCCACTTTGGCGGCGCGCGACGAAAT 13915 28 100.0 33 ............................ CTCGCGGGCGGCTGCGGTTGTTGCAGGGGCAAC 13976 28 100.0 32 ............................ TTCAGCGCGCTAAACCCGTCGTACATAACGCG 14036 28 100.0 32 ............................ AAAGCTCAATCCGCAGTCGGCGCGCAGCCAAG 14096 28 100.0 32 ............................ CCCGGTAAAAGGGACCTCCGATTAGCCGGCAT 14156 28 100.0 32 ............................ AAGTACGCGCGCGTCTGCACCTGCGCGGCTTC 14216 28 100.0 32 ............................ TGGGGACTGCAGCTAAATGGCTGTGCTCACTC 14276 28 100.0 32 ............................ AACCGGCACCGGCAGCAACAATAGTGGATTCG 14336 28 100.0 32 ............................ ACGGCGTTGGTCTGTTCCGAGATGGCGGTGAG 14396 28 100.0 32 ............................ CATACAGAGGGCTAATTTGAATATCGCAGAAC 14456 28 100.0 32 ............................ TTCACGTCCACCGTGAAGCCGTGGAAGTGCTG 14516 28 100.0 32 ............................ TCAGGCGCGATGCCGCAGGCGGCCATGAGGCC 14576 28 100.0 32 ............................ TGTCCACGCCCATCCTGCAGATCCCGCCCACC 14636 28 100.0 32 ............................ GGCCTTGCCGATGTAGACGGCTTCCTCGCCGT 14696 28 100.0 32 ............................ CTGACGTGGTTTTCGGCGACCGCCGCACCGAG 14756 28 100.0 32 ............................ CTGGTGCGGCCGGTTCCGCATGTCCACGGACA 14816 28 100.0 32 ............................ TGTGGCGCCGCGCTGGTGGTCCTCAATGACCT 14876 28 100.0 32 ............................ TTGTGCTGTGGCTTGCGGTTTGTGAATCCGGC 14936 28 100.0 32 ............................ AGCCGGGTTGTTTTGTTAATGCTCCAGCGACG 14996 28 100.0 32 ............................ AACACACCGAAGAACCTAAAACATGACCAACT 15056 28 100.0 32 ............................ TCCCTTGATTCTCATGGTCAATACACCCGACC 15116 28 100.0 32 ............................ AGAGCAGCCGGCCACGGCGCGATTCACAAAGA 15176 28 100.0 33 ............................ ATCCACTTCTGACACCAAGACGCAGGGAACCAC 15237 28 100.0 32 ............................ TTCATCTCGGCCAGGAAGGCCCGGTATTCGTC 15297 28 100.0 32 ............................ ATCGCGGCGGCGTAAACGGCGAGCGGCGTGCC 15357 28 100.0 32 ............................ TTCGCGGCGGACCTGCGACGGCGCCACGCGCC 15417 28 100.0 33 ............................ ACCGTTGTACGCCGATTCATCCGCGGTCGTCGT 15478 28 100.0 32 ............................ ACGATTGCTGACCGGCTGGTGCGCCAAGTTTC 15538 28 100.0 32 ............................ GCGCTGGAGGCGGTGCGCACCGGCACTGCGCT 15598 28 100.0 32 ............................ ATTGAACGGCGCAACCCACTTCGCAGCCTCCA 15658 28 100.0 32 ............................ TCGCGCTCGTAGAAGCCTTTGCCCTGGAAGTC 15718 28 100.0 33 ............................ TGATCCGGTGGAGCCGTTCCAGCTACGCATACC 15779 28 100.0 32 ............................ ACGGACCCTGACGAGTGGGAGGCGCCAACGGC 15839 28 100.0 32 ............................ AAGCCGGGCTATCATGGGAAGCTGCGCGCTGC 15899 28 100.0 32 ............................ ACACAGCGCCGGCCGAAACAGTGAACACCTGG 15959 28 100.0 32 ............................ TGCAGGGTCACCAGGATGAACGCGCCGCTCAC 16019 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 96 28 100.0 32 GTTCACTGCCGAATAGGTAGCTGAGAAA # Left flank : AGCAAAGCTGGCTCAAGGGCATGCGCGACCACTGCGCGGTGGCGGCCATGGCCGCCGTGCCGTCCGGCGCAGGCCACCGCACGCTGCGCCGGGTGCAGGCGCACAGCAACCCGGCGCGGCTGCGCCGGCGGCTGATGAAGCGCCACGGTCTGGACGAGGCGCAGGCGCTGCAGCGCATACCGGACAGTGTGGCCGAGCAACTGCGGCTGCCGTTCGTGACGCTCAGCAGCGCGAGCACGGGCCAAAGCTTCCGGCTGTTTCTGCGCCAGGGCCCGCTGCAGTCCGAAGCGCAGGCCGGCAGCTTCAATGCCTATGGCCTCAGCACCACGGCCACCGTGCCGCATTTCTGACCCGGCCCACCCTTTTTTGACCCTTTTTTCCAAGGCGCGCGCAAGTGCTTGATCCATCAGGCACTTGCGCGCCGCTGCGCCAAAAGGGTCCGACGGGCTGAAAAGGCGGAAAGCTCTTTAACAACAAGCACTTAGAATGGAAGGCGGCTT # Right flank : CTTCCGCGCTCGTCGGCGGGTTGAAGGTCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGTAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 50597-55205 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCTC01000028.1 Azohydromonas lata NBRC 102462, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 50597 29 100.0 32 ............................. CGATCCGCTAGAAATAGGCCGAATAATTGCAA 50658 29 100.0 32 ............................. AAATGTTATTGCGCATGGGGTACATTCCGCAC 50719 29 100.0 32 ............................. GTATTGGTCGATCCAATCGGGCCGCTTGAACT 50780 29 100.0 32 ............................. CCGTCGGTGCTGTAGCCAAAGAGCCTGTCGCA 50841 29 100.0 32 ............................. CCGCTCAGATGATCGAGAAGATGCGCTTCGGC 50902 29 100.0 32 ............................. GACCAGGCGGCCACGCTGCGCGCCAGCCGCCC 50963 29 100.0 32 ............................. ACGGCCTTGATGACGTAGGGGCCGACCATCCA 51024 29 100.0 32 ............................. GAACACATCGCCCGCAACCACGAGCACCTGAA 51085 29 100.0 32 ............................. CCTGCTACGCGATTCTTCGCACTGCCAAGCTC 51146 29 100.0 32 ............................. CTAGTCGGCATGATGGAAACGCTCACCTTGCA 51207 29 100.0 32 ............................. GCCGCGTGGCGTCAGCCGGACGACGCCTCCCA 51268 29 100.0 32 ............................. ACCGTGGAGATTCGCACGCAGGACGATATGGC 51329 29 100.0 32 ............................. GACAGCGCTTGCAATTGCGCCAGCGTCATACC 51390 29 100.0 32 ............................. ACAAATAAAGAAAACGCGTCCGGTGCGGAATC 51451 29 100.0 32 ............................. TTTAATGTTCATTTTCAAGCCCTTAGTAAATC 51512 29 100.0 32 ............................. ATTTGCCATATAGCCCTGACGTGGCGCTTGAT 51573 29 100.0 32 ............................. TATTCCCGGCCGATTTCGAACGCATCGGCAGC 51634 29 96.6 32 ............................T AAATGCAATCCTTTCGTCTGCCGTCAATAAAC 51695 29 100.0 32 ............................. TGTCGGGCGTACCGAAACATGACGTGTGAATC 51756 29 100.0 32 ............................. CCTGTCGCTGGCGCAATTGCAAGCGCTGTCGG 51817 29 100.0 32 ............................. AGTCGAGCAGACTGCCAAGAAATCCCGTAATT 51878 29 100.0 32 ............................. CAATCGTGAATCAGGCTGCCGGTCGCGACATT 51939 29 100.0 32 ............................. ACGCTGCGTGAGACTTTGATCATGTCGCGTTC 52000 29 100.0 32 ............................. CCGACTTACTGGGACGGGATTGATCTCGTAGC 52061 29 96.6 32 ............................C ACAAGTGCGGCTTCGTTGGGGGCGCTGGATTC 52122 29 100.0 32 ............................. CTTGTGCAGCGTCTCAACCTTGAGTGGGAACG 52183 29 96.6 33 ............................C GTGTTGCACACCGTGCGCCTCCAAAAGCTGGGC 52245 29 96.6 32 ............................C CGATCAATCCAGGGCCCCCAAGGGGGCCTGAC 52306 29 100.0 32 ............................. GGCGACGAGGTGCGTGATGGCCTGACGTCGCT 52367 29 100.0 32 ............................. GAAGAGGCGGTTTCGCGGGTCGACAGACAGAC 52428 29 100.0 33 ............................. CTCGCGCACATGATCTACCCGCGCGACGACGGC 52490 29 100.0 32 ............................. TTGTGAATGCCGCTGCCCGTGAAGCCGGTCAT 52551 29 100.0 32 ............................. CGCAGGCCTGCCAGCAGCGCCTCAGTGCAGCC 52612 29 100.0 32 ............................. GTGAGCAGGCGCTGCTGCAGCACGAGTACACG 52673 29 100.0 32 ............................. GACGGATGCCATGGACAACCAACCCCGTGAAG 52734 29 100.0 32 ............................. CTCGACAACGGCGGTACCGTTTTCCGTCCCGG 52795 29 100.0 33 ............................. TGTGCGAGCCGTTTTAAAAATGGCTTAGGGCTG 52857 29 100.0 33 ............................. GATTGGAGTCGGCCACGACAACATCAGACCCCG 52919 29 100.0 32 ............................. AGGAACCGGATTTTCACGAAGAACACGCCGAC 52980 29 100.0 32 ............................. CAGGAGCTGTCGTCGGGCATGACGACCAGCAC 53041 29 100.0 32 ............................. GAACTGGAGCGGCAGGTTGAGGCGCAGCGAGA 53102 29 100.0 32 ............................. AGTACCGGCGCGGTGCCGGCGGGCGGTGGGGC 53163 29 100.0 32 ............................. GAGCACTGACTCATGTCATCCAAATCTGTTGA 53224 29 100.0 32 ............................. CCCAGCATCTTGGTCAGCGCGTCTTCCAGGCC 53285 29 100.0 32 ............................. CGACTCATGGCTGCCCTGCTCGCGGAGCTGCA 53346 29 100.0 32 ............................. CGTATTTCGAAACTGTCCAAAATCCCCGCGAC 53407 29 100.0 32 ............................. TTGGGCGGTGGGGGTGGTCATGGGAGTGGGAT 53468 29 100.0 32 ............................. GCATGCCCGGAATGCGGATGAAAATCCAATAA 53529 29 100.0 32 ............................. GTGGACGATGCGGACCCGCTGGCCTCGTTGGA 53590 29 100.0 32 ............................. TCATAGGACGGTTGCCGCACCCGACAAACACG 53651 29 100.0 32 ............................. TACACGCACGGGTGGCACATGGACGCCATCTC 53712 29 100.0 32 ............................. CAGCTCTGCGGACTACGCGGCGGCGTGGTCTT 53773 29 100.0 33 ............................. GGCAGGCATGACGCTCGAAGAATCATTTTCGGC 53835 29 100.0 32 ............................. CACCAAGTCCCTGAAGAACATTCGTTAGTGCA 53896 29 100.0 32 ............................. GCGCCCGGCTCACGCCCTGGTTCGACCCAGCG 53957 29 100.0 32 ............................. GCTTACGAGTACGGACGAATGGTCGTCAACAA 54018 29 100.0 32 ............................. TCGGCCGCCAGGCCGTACAGGTGCGCTGAGGA 54079 29 100.0 31 ............................. CGGTAAAGACTGCTGTTTTTGTAGGCAACCA 54139 29 100.0 32 ............................. GCCATCCTCGGTGGCGTGGGCGAGGTTGCTGC 54200 29 100.0 32 ............................. CTCAACGGCCTGGCATCAGGCTCTGTGGCTGC 54261 29 100.0 33 ............................. AGGTGTGAATGGTGCGGTAGGTCATACGTCTTT 54323 29 96.6 32 ............................A CGCATCCAGTAAGCCAACTGCTCCGTGAGCAC 54384 29 100.0 32 ............................. GCAAAGAAGCCGCGCAAGCCTCGTACTTGATG 54445 29 100.0 32 ............................. TTCGCGTCATTGCTGAAGAATTAGCCCGCGCC 54506 29 100.0 32 ............................. GCAGACATTACCCGCGCCGGGGCGGCGCAGAA 54567 29 100.0 32 ............................. TCTGGTGTGTACCGGGTGTTATCGGCGAGCTT 54628 29 100.0 32 ............................. GCGCTCGTCAGGCATTGCCGTGCTCCTCAGGC 54689 29 96.6 32 ............................T CACAGCGACAGTGGACAACCCGCTGCGCCGCG 54750 29 100.0 32 ............................. TCCGAGGTGGAGTGCATGCCGCCGCTGCTGCG 54811 29 100.0 32 ............................. GTGTTTCCACCACCGATTTGGAATGACAGCCC 54872 29 100.0 32 ............................. CCCTGCATGGGGCCCACGTCGCCGGTCTTGAG 54933 29 100.0 32 ............................. TGGTTGCCGACGCATGGAAGGACGCGCACGAC 54994 29 96.6 32 .........................G... AACGCCAGGCGGTCCAACTCCAGCAGCACGCA 55055 29 89.7 32 .C.............A....A........ GGTCAGCATTACTTGGCGCAGGATTCGTGCCG 55116 29 89.7 32 .C.......A......T............ CTGTGGCAGCTTTCATATCAACTGGCGGCAAT 55177 29 89.7 0 .C.............A............T | ========== ====== ====== ====== ============================= ================================= ================== 76 29 99.3 32 GTATTTCCCGCGCGAGCGGGGATAAACCG # Left flank : AAGCTGCTGGAGCGGATCATTCCGGACATCGAGACCATGCTGGCCGCGGGCGAGATCACTCCACCCAAGGCACCGGCCGACGCGGTTGGGCCAGCCTTCGCGGACGACAAGGGAATAGGCGATGCTGGTCATCGTGGTTGAGAACGCCCCGCCGCGCCTGCGCGGCCGGCTGGCGGTATGGCTGCTGGAAGTGCGCGCGGGCGTGTACGTGGGCAACTACGGCCGCAAGGTGCGCGAGCACATCTGGAGCCAGGTGGAGGAAGGCCTGGAGGACGGCAACGCCGTGCTGGTGTGGCGCAGCACGGCCGAGGCTGGCTACGAATTCAAGACGCTGGGCGCCAACCGGCGCATGCCGGTGGATTTCGATGGTGTGCAGCTCGTGAGCTTCCACCCGCCGTCGCCCGGCAACGCTCCTTAACAACTTGATCTACATCAGGCGTTTTTTCGGTAGCTCCGAAGCGGGGCAAAAACACCTTTAAAATCAACGGGTTAGAGATAGA # Right flank : TTGCACCGGCACATCCAGGTCCACGGCCACGGCTACGGCGTATTTCCCGCGCGAGCGTACTGCTGTCCGGGGAAAACGTAACGATTGCCGAACAGGGCTGTAGGCCGAAGAAAAACCGCCGTCATCCCGGCGAAGGCCGGGATTCACGCGCATCAAGGTGCTGGCGTGAAACCTGTTGGCACGCCGCGGTGCACAACGGGGCGATATCTCGGTACTCGTGGATTCCGGCCTTCGCCGGAATGACGACTCTTTTTCTTGCAGCCCGCACCCGTAGCACTCGTAGTGCTTGATTGAGCAGGGTGCCGGTCATCGTTCGTTTTCCCCGGACAGCGGTGCGCGCAAGCGGGAATAAACCGTAGAACTCGGGCCTGTCCGTCGAGAAGTGCGTGTATTTCCCGCGCGAGCGGGGACAAGTCGGGCTGCGCCACCGCTGCCACCACGCTCAGAAATATTTCTCACGCAAGTGCTCTGCTGCCCGGGCAACGCCTGGGGTTTCCGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65007-60228 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCTC01000028.1 Azohydromonas lata NBRC 102462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65006 28 100.0 32 ............................ TACGAGACGCTGGCCGACATCGTGGGCTTCGG 64946 28 100.0 32 ............................ CTGCCGGCGTGGTGCTCACGGGCGCCGAGATC 64886 28 100.0 32 ............................ AAACGAGAAGCCCGCCATGGCCGCCCCTTACA 64826 28 100.0 32 ............................ TGCGGCCGGTGGCTTTTCGCCGATGGTGGACT 64766 28 100.0 32 ............................ ACGCTGGGCGCCGCGGTTGCGGCGGTGCCGGC 64706 28 100.0 32 ............................ TTCTGGGTATGTTTTTGTCGCTCCTGGCGGTG 64646 28 100.0 33 ............................ TGGAGCAAAACCATATTCAACGATAGATTTCAA 64585 28 100.0 32 ............................ AGTGGCATCAAGCTGCTTCTGCGCCGTGGCGA 64525 28 100.0 32 ............................ AGCCGACACGGTGAAGCCGGTCGCGATCGGCG 64465 28 100.0 32 ............................ TCCAGGCGCAGCGTGTGCGTCTCGCCGGTGTT 64405 28 100.0 32 ............................ TTGTCCCAGTTGAACACCAGGAGAGCCAGGTC 64345 28 100.0 32 ............................ TGATCAGACGGCTTCGACGATGGCCATGAACT 64285 28 100.0 32 ............................ AGTACTGGCTGTCGTGGAGCAGCTCACAGATG 64225 28 100.0 32 ............................ TGCAAGCCAAAGGCGTTCAAGCTCATCGCGGC 64165 28 100.0 33 ............................ CTGACGGCCCGTCCGTTCATCGACACGCTGCCT 64104 28 100.0 32 ............................ TTGAAGGAAACCACCTTTGCCGAGTTGCGCAT 64044 28 100.0 32 ............................ TCGCCAGAGTCGCCGACCTTAGGGTAGAAGTT 63984 28 100.0 32 ............................ ATGAAAACCATAAGGGAGGGCGGCGCAATGGC 63924 28 100.0 32 ............................ AACGAAATCTTGGGCATCGTGGACCTGGGCAC 63864 28 100.0 32 ............................ ATTGGCAAGCGCTGGCGCGACAAGAACCCGGA 63804 28 100.0 32 ............................ ACCGTCTGCACCCACCACGCGCGCACGTCGCC 63744 28 100.0 32 ............................ ACCGCGCGGCGGCGAGCTACCTCGTGCACCAG 63684 28 100.0 32 ............................ CCGGCATTGACGCTGATGCTCAGCGCGGACGA 63624 28 100.0 33 ............................ GTTGAAGAACAGCTTGTGCCCGGCCGCCTTGGC 63563 28 100.0 32 ............................ AGCGGCCGTTTGCCGGGTTGCTGCTGGGCTTG 63503 28 100.0 32 ............................ TTTACGTCCACCGTGAAGCCGTGGAAGTGCTG 63443 28 100.0 32 ............................ TCGTGTGCGGCTCGCTCGCCCTCGCGCAACGT 63383 28 100.0 32 ............................ AATTGATCGCGGCGGGCATTAACCGGCCGGTC 63323 28 100.0 32 ............................ AGCGCGGAGCGGGCGTAATCCTCCATGTCCGC 63263 28 100.0 33 ............................ CTGGTGATGCCTGCACGCGCCGCAGCCGCGGCA 63202 28 100.0 32 ............................ TTTCAGCCAGGCAGGCCGCGGAGCGGGGTTTG 63142 28 100.0 32 ............................ CCATGCCTACCTGACCCCTTTCAAGGCCAAGG 63082 28 100.0 33 ............................ CTGGTGATGCCTGCACGCGCCGCAGCCGCGGCA 63021 28 100.0 32 ............................ GCTGCTTGCCGGTCGCGCCGGCAGGGTCGTTG 62961 28 100.0 32 ............................ ATCCAGCACGTGGCGCCGGACTCGGGACCGGC 62901 28 100.0 32 ............................ CGTGATGACGGCTGCCGGCCGCATCATCAACG 62841 28 100.0 32 ............................ TATGACATCGGTGGCGAGTACGCCGAGGACTT 62781 28 100.0 33 ............................ TGGCTGGTCGACCTGGGGTTTCTCGCCGACACC 62720 28 100.0 33 ............................ TTGAGCGGGCTTTTTTTCGTCTCGAACATTGAT 62659 28 100.0 33 ............................ TTTCGACAATGGCAGGCGGAAAGCCGGTGCCAG 62598 28 100.0 32 ............................ AATGCGAGCGAACTTTTTAATGTCACGCTGTC 62538 28 100.0 32 ............................ CTGGCGCGAGGTGATTTCTTCGGCGCGGGTGA 62478 28 100.0 32 ............................ CAGCGGCGGGCCGAGCGCCTAGCCACCGATCC 62418 28 100.0 32 ............................ CTATTACGTCCGCAATCTCTTGGACAGTGCGC 62358 28 100.0 32 ............................ TCTGAGTGGATGACGGTCCACGTTTTCCCGCC 62298 28 100.0 32 ............................ TGGTCCGGCAGCCCAAAAACCATGCGGGGCCG 62238 28 100.0 32 ............................ TTGCCCGGCCGGGGCGAGTTCGTCATCGCAAT 62178 28 100.0 32 ............................ GGCGAGAAGGGCAACCACCTGGTGCTCATGTG 62118 28 100.0 32 ............................ ATCACGCCGCGGCGGCGGAAGATCACGCCGTC 62058 28 100.0 32 ............................ AGGCGCAGCCACTTCTCGAAGCTGAAGTCGCT 61998 28 100.0 33 ............................ CAGTGGGTGGACGGCGGCCAGCAACTGGACCCC 61937 28 100.0 32 ............................ TTGCCCTTGCCGCCCACGTCCGGCAGGTTGAA 61877 28 100.0 33 ............................ CTGGAATTTGATCGGGCAGAACTCGGCGCCGGC 61816 28 100.0 32 ............................ TGGACCCTGCCGGCATCGTCACGCCGGCTGGC 61756 28 96.4 32 ...................A........ AAAGCGTCAACAAGTCACAACGAGTGCACCTG 61696 28 96.4 32 ..................G......... GGTCCCCGCAGCCGGCGACGTGATCAGAATTC 61636 28 100.0 32 ............................ TGGGCATGCAAGGCCTGGAGTTGCAGTGGACC 61576 28 100.0 32 ............................ TGGGCCGTGCGCCAGGTTGAGCCCGCCTGGGT 61516 28 100.0 32 ............................ TAGCAAATCGGCTCAGGACCTGCTGATTGCCG 61456 28 100.0 32 ............................ CAAAACAAATCAAACATGGGGCGGTCCTCTCA 61396 28 100.0 32 ............................ CAGCGATATATGACATGGCCAAGGCCATGAAT 61336 28 100.0 32 ............................ AAGGTCAAGGCCGAGAAGGCCAAGGTGGGCCC 61276 28 100.0 32 ............................ TGGTAGGTCTCCAGCGTGCGCATCCAGCGGCT 61216 28 100.0 32 ............................ ACCAGCGCGCGCAGCGTGCCGCCGTGGCTGAA 61156 28 100.0 32 ............................ TTGATGCTCTGGTGACGAAAGTCCGGGCCAAC 61096 28 100.0 32 ............................ TATGCGCAGTCACTGCGCGAGGTGCTGGCCAA 61036 28 100.0 32 ............................ GTCAGAATGTTTCGACCCAGCGCCGTTATTGC 60976 28 100.0 32 ............................ ATGCGAGGTGCTCGCGGCCCACCACGTCCGAC 60916 28 100.0 32 ............................ AGCAGTTGGAAGCTGCGCAAGGCCGACGGTGG 60856 28 100.0 32 ............................ TTGAGGGCCTTGGGCGCGGCCACGAGGTCCAG 60796 28 100.0 32 ............................ ACGGCGCCCACCGTCAAAAGTTGGTTGCCCGT 60736 28 100.0 32 ............................ TGGTTGATGACGTCCACGCCGGCGGAGTCGCT 60676 28 100.0 32 ............................ TGCGGACAACAGGCCGGTGAGGAGGCCACTAC 60616 28 100.0 32 ............................ TGCGTTCACTCGCGGAGCTTCTCGCGGTCGAC 60556 28 100.0 32 ............................ AATACTCGGGTCCTCGCTCTAGCATTTCCTTT 60496 28 100.0 32 ............................ TTGACGTTGCCGCGAGTCCACTCGGGCATGTA 60436 28 100.0 32 ............................ GATCTATGCAGCGATCAAGCAGCAGATCCACG 60376 28 100.0 32 ............................ ATCATCCCGGTGCTGGGCTTCGAGCTGTGGGT 60316 28 100.0 32 ............................ ACCGTCAAAGCAACGACCGCCCGCTGATGACC 60256 28 89.3 0 .................C...C.T.... | G [60231] ========== ====== ====== ====== ============================ ================================= ================== 80 28 99.8 32 GTTCACTGCCGAATAGGTAGCTGAGAAA # Left flank : | # Right flank : CTTGCCAAAGCATTCATCGCCCATGAGCGATATCCAGGGCCGCTGAACTAGCACTCGTGGATACCCGCTTTCGCGGGTATGACGTAATGGGGCGCGGTGCGTGTCTGGGGAAACGGGCGCGGGTTGGTTTTTCAAAAACGCAGTTCGCGGCCAGTTTGAGGGCCGCCTGCGCGGGAATGACAATGCGGTGAATGCCGCGGCGGGGCGGCTTGCAGCGGGTATTCGCAAACACGGCCGTGGCCGCGTGGAGATTTGCTGGGGCGGCGGATTTTGGGCCAGCGCAAATATGGAATCGGCCGGCCATTCGGCCCGCGAGCGGGCCTCCTACAAGTGATTGCCGGGGGTTGGGTCAGCCGGGTTGCATGCCCGGCGCGGGGCCGCCGGCGTCCGCGTTCCAGGTTTTCACCTGGCCCGCCTTGCAGTGCTGCAGCAGCGTGGTCACGAAGGCCGGCAGCTCCCGGCGGTGGCCGTTGATGAAGAAGCGGTCGCCCAAAAACTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGTAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43051-44911 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCTC01000053.1 Azohydromonas lata NBRC 102462, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43051 29 100.0 32 ............................. CAGAAGGCGTGCAAGCAGCCGCCCCAGCCCGT 43112 29 100.0 32 ............................. GCGCTCGCGGGTTTCGGCCGTCACCAGCGAAT 43173 29 100.0 32 ............................. CCATGGCCGGCAGCGTCGGCAAGGCCGTCAAG 43234 29 100.0 32 ............................. CGGCCCAATGGTTCAATGAACTGACTGGAAGT 43295 29 100.0 32 ............................. TCCACGCCCACGACGTCGGCCACGCGGATCAC 43356 29 100.0 32 ............................. CCGCCGCCCTTGAAGCCGCCAACTCGGCCGGC 43417 29 100.0 32 ............................. CCGCCTTGACCAGCCGCGGCACGTTCACCAAC 43478 29 100.0 32 ............................. CACGACGCCATCCAGCTGCGCTTTGCGGGCGC 43539 29 100.0 32 ............................. TTTGCGCGGCAGGACCACGTTCACCCCACGGA 43600 29 100.0 32 ............................. GCTGCGCCCACGGCCTGGCCGTTGACCTGGTG 43661 29 100.0 32 ............................. ACCATGGGCGGCACCGGGCCCGGCGCGTACTG 43722 29 100.0 32 ............................. TTCGCGCAGCGAGAACAGGCCCACGGCGACAT 43783 29 100.0 32 ............................. TGGACGAGGACTAAAAGGGAGTCGGCCGTGTC 43844 29 100.0 32 ............................. GTAAATACGGTTTGGGCAAAATATCCGATTTA 43905 29 100.0 32 ............................. CCGAACGTCGCCCCCTGGAACAGCGAATTGCC 43966 29 100.0 32 ............................. GACCGGGACACGTAGATCACTGATCCGTGCCT 44027 29 96.6 32 ..........................A.. GACACGTGGGAAGGGCTGTTCCTCACGGTCTC 44088 29 100.0 32 ............................. CGTCAAACCAGGAGAAAGCAAATGGCTAAGTC 44149 29 100.0 32 ............................. AACGGCTTCGTGAATGTGGCCGACCTTATGGC 44210 29 100.0 32 ............................. TTGGCCGCGGCCATCGGCGTGGATCTGTCGCA 44271 29 100.0 32 ............................. ATCCAGGAGCAGATGCCTCGCGGTATGAAGCG 44332 29 100.0 32 ............................. GGCTCCTTGGCGATTCGCTCCACCTGGTGGAA 44393 29 100.0 33 ............................. AACGGTCAGTCCCACCTCGTTTCCTGACCACCT 44455 29 100.0 33 ............................. GCCAGCCGCCGTGCGGCTTTGTCGCGGGCGAAC 44517 29 100.0 32 ............................. ACTTGGTCCGTGCGGGGCGCGGCCGGCGAATC 44578 29 100.0 32 ............................. GGAATCCACTTCAATGACGGCGGTGGGGATTC 44639 29 100.0 32 ............................. TGATGCCACAGGCCGTTGCCGCCCCACTCGCG 44700 29 100.0 32 ............................. TCTCCGAGCATGTCTCCACCGGCGCGCCGGAC 44761 29 100.0 32 ............................. CAGTTCCAGCGGTTCGACTTCTGCTGGTAGAA 44822 29 100.0 32 ............................. ACGCCAGTGTTCGTAGTGGAAAATCTCACTGC 44883 29 86.2 0 .C........T...........C....T. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.4 32 GTATTTCCCGCGCGAGCGGGGATAAACCG # Left flank : GGCGCTGCACGCAAGGTGCAGCAGCGACGGCGGCAGTGTCGGCGCCCGGCATGACGGTCTCATGTCGCGCCCGTGTCGATTTCGTGAAATGGGAGCCACAGGCTGCAACACGGCGGCCGCGACAATTGCGCCCCATGAAATCAAAGTTTTCCCTTTTTGCCGGCCTGCTGGCCGCCTCGCTGCTGTGTTCCGGCTGCGCCGTCGTTTCCGTGGCCGGCGCCGCGGCGGGTGCGGCGATCTCCGTGACCGGGGCCGTGGTGAGCACCGGGGTTTCCGTTACCGGGAAAGTGATTGAGAAGACGGTGGACGTGGTGGCGGGGGGCGACTAAAAGCCTTGATCGCCATCGCCCGCCGTCACGCACGGCCGCGGTAAACCCCTCCCCTGAACCGCCTCCACGCCGCAGCGACGCTCCTTAACAACTTGATCAGCATCAGGCGTGTTTTTCGGTAGATCGGACGGGGCCGAAAAACACGTTTGAAATCAACGGGTTAGAAGTAGA # Right flank : CGCCAGCGGATGGAGTCAGGATCCACGAACGCTGCAAGGCCGCCCGAAAAAACCTTTTGGTGTCAGCTGCAGCCAGTGAGTTGCGCTGACTACTTTTTCATCCCCGGGCAGGCCAGTGCTGTCCGGGAAAAGTGGACAAGCGCCAGCCGGAGACAGACGCGCAGCGCCCCCGGAAGTCGTCATTCCCGCGAAGGCGGGAATCCAGGCGGCCCCCAAGCTGGCCGTCAGCCCACGGGGCAGCGTCAGAAGGTCCAAAACCGCGTTTTTCTGCCCTTCGCTCTGGCGTGGGGCCGCCTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //