Array 1 1081540-1083078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013612.1 Pseudoalteromonas rubra strain SCSIO 6842 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1081540 32 100.0 33 ................................ GTTGATAGAGCAGAATGTAGTTTACGTCACGTA 1081605 32 100.0 34 ................................ CGAGCAGTCGATGCGCAAACGCATGTCCTGAATT 1081671 32 100.0 34 ................................ CGCTTCCCAGGGCGACCCCTCAGCCTCTACTAAC 1081737 32 100.0 33 ................................ TACGAACATCACGATTTATGGGCCAAAACAGGC 1081802 32 100.0 34 ................................ TCAAAAAGTAACTACCAAAAACTAAATCAAGGTA 1081868 32 100.0 33 ................................ GGCTCAGGGTATTGTCTGGCGATTACGACCTAT 1081933 32 100.0 33 ................................ TTTTTGAATCGTTCATATTTACACACGAGCAGT 1081998 32 100.0 33 ................................ ATGGTAGAGCCTAAACGTGGCTTGTATTCATTA 1082063 32 100.0 33 ................................ CAACCATCAGCTGATTGACCGATTTGACCGTGA 1082128 32 100.0 33 ................................ AGCATGACTTGTTGTTTGCTCGTTTCGCGCTAA 1082193 32 100.0 33 ................................ GTCGCATGTGTGGTAAGGCGCTGTCTGAAATTC 1082258 32 100.0 34 ................................ GACCTCAGTGTAATTAGTCAGGATGAGGCGCTAA 1082324 32 96.9 33 ..............A................. CGCATGATGAAGCATGAAGGCTGGGATGAAGTT 1082389 32 100.0 33 ................................ TTTTTGGACTCGACCAAACTGGATCACAACTAC 1082454 32 100.0 34 ................................ CCTGCCACAGGGGCAGACCAAGCAGGTCCCCGAT 1082520 32 100.0 33 ................................ GCCATTGATTGATAGTTCTCAATCATGAAATGA 1082585 32 100.0 33 ................................ TGCATCGCGATGGAGGGCGTCTAAAACCCTCAA 1082650 32 100.0 35 ................................ CACCGCAAAACTCATGAGGCGGCGCATGGTCTTAT 1082717 32 100.0 33 ................................ AACCGTGAAAATATACATCGGCAGTACAGTGAT 1082782 32 100.0 34 ................................ ACCGGACAATCCAGTTGCAACATTGCCATTAACC 1082848 32 100.0 34 ................................ ATTGTTCGGCTGCGGGGCATGCGCTTGCTCTCCA 1082914 32 100.0 34 ................................ AGCTCAGTCGTTCCGATTTAGGTACGGTGTGGAG 1082980 32 100.0 35 ................................ AATACCTACGATAAAAAGAAACAAAAAGTCACTAA 1083047 32 96.9 0 ..................C............. | ========== ====== ====== ====== ================================ =================================== ================== 24 32 99.7 34 GTCGCGTCCTGCACGGGCGCGTGGATTGAAAC # Left flank : TTATTATTCTCAGCATTTTTGTGTGGGGCGAAATCCGCTTTTTTAATGCCATCACCAGCAACCCAGACAACACACTCAGCGCCGAACAAATGCAGGCCAAACTAGAGCTACTCGCCAGCCAGCGCGCCACCTTCCGTGCATTCTGGTTCGACACGCTACAGCTGATCATACTCAATGTGCTCTTCCCAACCCTCACCGCATTACTGGGCTATGTGTTTGGCACCAGCAGGAATAATGGGGCGTAAAGAAGGTCTCTGTTTCTGGGTTAATATGTTTACCAAAGTCTATATTTAATCGTTTAAAAAACCTGAAACATGAAAAGAAGCGCTAACCCTTAGTTCTCATGAAAACCCCAGGAGGTTAGCGCTCTTATATGTTCTTCAAAAATAAGGATATTTTTTCAGCTGCTTAGATTTGATCTGGATTGGCTTGCTTGTTGTAGCGAGGTTAGCGCAAAACCTGCAATTTTGCTAAGCTGGCTGTGCCTTATAGCTAAGGCT # Right flank : CATATAGTTGAAAGAGAGCGGGGGATTTATTCACAAAGCCAGGCCTTTCGGTGAGCCTCGACCTTAGCTCAGCAAGTTACGAAGCGATGTTTCGACCTTGCCCTTTTAATTATGGTAATCGAGATTTCGCTATGGGTTTGTTTGGACATAGTAGCTGTTCAGCTAATGACCACACAGTGCCAAGTGTTATAAACATTAGGCCAGTAATAAGAATAGCAAAGCTTATTAGCAGAGTAAAAATAGCCGCTAAAACTGGGGCACCCAACATGGCACTGAGCCACTCATATTGTGCCGCCAGGTAAACCCAACAGAATAAAAGGCACCAAGGGAATAAAGTGCCGGGCTCCAACAAGCTTGTGACCCAGCTATCCAGTGTGTTTAGAAGCTTTTCAGGTGTTGCCGTCATTGTTTTAGATCACATTTTAATTTAAAAATTTATTCATTTAATTTACATTCTTAGCTGTATAGGCAAAATAAACAATAAATTAAGCGCTAAAAAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1091828-1092976 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013612.1 Pseudoalteromonas rubra strain SCSIO 6842 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1091828 32 100.0 35 ................................ AGTTTGGTCCTCGCACCAGTTAAATACCGTTTGAG 1091895 32 100.0 33 ................................ TGAAAATGATCACCATCATGCCAGTGGACCAAA 1091960 32 100.0 34 ................................ GTAAGTGGGAGTCTGATGTTGAATGGTACATACA 1092026 32 100.0 33 ................................ TAGGTACCTAGCAAATACAAACGCACAAATTAA 1092091 32 100.0 34 ................................ ACAGGTAGGCTATTAAGCCAAGATTGGGAATGAA 1092157 32 100.0 33 ................................ GCCCTTATTCCACAAAATGTTGTTCGGCATATC 1092222 32 100.0 33 ................................ AATGCGTCTCCGGCGACTCAAGAAGGTCACAAG 1092287 32 100.0 35 ................................ AAAAACAGGGGGTTGCGTATGATGATAACAATCAG 1092354 32 100.0 33 ................................ CCCAGCCGAGCAAAACATAGTTATCATTGAAAG 1092419 32 100.0 34 ................................ CCTATCCCGACATTCAAAACCCGTGACTCTGAAC 1092485 32 100.0 33 ................................ ATGTATGTATGTCTGCCCAGTCATCGCATTTTA 1092550 32 100.0 33 ................................ CTCACCCTCCTGCGGGTTGTGTGTCGTAAATTT 1092615 32 100.0 35 ................................ AGTTAGCTCAAACCAGGGGCTTAACTGACGAAGAC 1092682 32 100.0 35 ................................ TCATCAAACGCCGCTTTAAATTCAGGGTCGTCCAA 1092749 32 100.0 34 ................................ AACGAGCTGGCATTATTATGGCGAGAGATAGAGT 1092815 32 100.0 33 ................................ AAAAAGTCATTTATACAAGAGCTGCCTGTCTCA 1092880 32 100.0 33 ................................ CCACATACCAGGCATCGTATAAAACTCAATTAC 1092945 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 18 32 100.0 34 GTCGCGTCCTGCACGGGCGCGTGGATTGAAAC # Left flank : GATATACACTATGATGGTATTGGTGACTTATGATGTTTCTTTTGAGAGCGAAGACGGACAAAAACGCTTACGTAACCTTGCCAAGGTCTGCCTGGATCATGGAGTGCGCGTACAGTACTCAGTATTTGAGTGCGAAGTAGACCCGGCGCAGTGGGTGAGCTTTAAGGCCAAGCTGTTAAAAATTTATGATCCACAAGTCGACAGTTTGAGGTTCTATAAATTAGGCAAAAACTGGCACAATAAAGTGGAACATCACGGCGCTAAAGCGGCCATTGATATTTTTCGTGATCCACTCATTCTTTGATCCCCAATTTGAATCCCTCAGCGCTAACCCCTGGTTCTCATAAAAACCCCGGGAGGTTAGCGCTTATGTATGTTCTTTAAAAATAAGGCTATTTTAAGTTACCGCTGGCTTGGCAGTGTGTTTGACCATGATTTTTATTGAGGTTAGCGCAAACCAAGCATTTTTGCTAAGCTGGCTGGGCCTTGGCAACAAGGCT # Right flank : CCACTATACGGAACCGGCTTGCATTCCCATCATCAGGTTGGGTTCTCCAAGCTTATTGGTGCCTTCTCTACACGCCAGGCTGCATAGTGGTGTTACAGTATGGTTATCGGTTAGCCTTGTTCCCAAACACTACCCCTAAATCACTGATTGAAGTCGCTTTCCATTTCTTTTTTGTAACATTTTCTCTCCCTTTTTATTTCAACTATCTGATAATGTTATAAAAAAATATATAGGCGTACGAATGGGTACATGTAGTAACATCTTTAGTTTGTCTATTTTTTGAAGCTGGTGATACTTTCTGTGCACTAACACACAATAATAAGAGGGAAACGCATGAAAAAAACAGCATTGGTTATGGCCATTACAGCAGCGCTAGCCGTTCTGGGTGGTTGTTCATCACAAGGTGAGCGCGGTACTCAGGCTTCGGCATCACACATGACGCCGGCACTGAAGTCGGGTATTGAGCAAAGCCATTTTGATACGAGTGTCAGACCACAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //