Array 1 931-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMIF01000317.1 Escherichia coli strain MOD1-EC6384 MOD1-EC6384_318_length_1040_cov_14.4309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 930 29 100.0 32 ............................. GTGATTCTGGCAATACTGGCACTTCCGTTTTG 869 29 100.0 32 ............................. GGCGGTTAACTGGTCCTGTGCGGATATGCGCT 808 29 100.0 32 ............................. ATGTGGAAAGGCGAGCTGAGGGTGGCCTACGC 747 29 100.0 32 ............................. GCTGAGGAAATTGCTAAACCCTCGCAGGATCC 686 29 100.0 32 ............................. TTGCCGGTACAGCTCCAGCATTAATCCCCACC 625 29 100.0 32 ............................. TTGCGACGTGGTGCGCGCTCGAGCACAACGTT 564 29 100.0 32 ............................. ATGTAAACCCCTCGCGCATCGAGTCAAATGTC 503 29 100.0 32 ............................. CCACCTCAGCCTGCGCGCCCGCTGAATATTCC 442 29 96.6 32 ...........T................. GGACGCGTTCCATCAGGGCGGGTCCAGGGAAT 381 29 100.0 32 ............................. CAGGCGGCGCAGTGGCGCATGAATCCGTTCGC 320 29 100.0 32 ............................. GAGTTTGTGAATTTAACAGAATTCCGCGCCCG 259 29 96.6 32 ............................A GCCAATTGCCATATATGCCATCGCCAGCAGCC 198 29 100.0 32 ............................. GAGTTTGTGAATTTAACAGAATTCCGCGCCCG 137 29 96.6 32 ............................A GCCAATTGCCATATATGCCATCGCCAGCAGCC 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCCGCCGACCCCCCCCCCCCCCTCCTTTCTATCGCTACCCCCACGACCGCGACCCCGCGCCTGCGTTGAGAATCCTCTGTAAGGACCAATATTTTGATATATATAAT # Right flank : GGAGTTTGTGAATTTAACAGAATTCCGCGCCCGGTGTTCCCCGCGCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 96990-96717 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMIF01000002.1 Escherichia coli strain MOD1-EC6384 MOD1-EC6384_2_length_105639_cov_21.5746, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96989 29 100.0 32 ............................. GCTGGGTACTAGCCAGGGTGAAAGGAAGTCAC 96928 29 100.0 32 ............................. GATAACAAAGTTACGCCATCAGTTGAATATGT 96867 29 100.0 32 ............................. TCGACAATGGATAAGTTGACTTCAGGTCTGGG 96806 29 89.7 32 .A...........T......A........ TGCAGTACGCCTGATGACAAACCAGGCATCGG 96745 28 79.3 0 .A..........T.........-.CT..C | C [96736] ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCTGCGCCGGATATGTTACCACCAGCTATCCCGGAACCTGAATTGCTAGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTTGCAATCTGGCTCCTGGAAGTACGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAAAGTTTGAATTTAGTTGGTAGATTGTTGTTGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCTGCAGGGAATGCGGTTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATCCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGTGTATTTTTCTTTTCGGAGTCACTCATCCGCTT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //