Array 1 150845-153158 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072053.1 Akkermansia muciniphila strain Akk14745a chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 150845 33 100.0 34 ................................. ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 150912 33 100.0 34 ................................. CTCTCTAAAAACCAACGGGTTACGATTGTGTCAT 150979 33 100.0 35 ................................. CGCCGTTATCTATCCCACCGGGGAACTAGTGACAA 151047 33 100.0 34 ................................. CGGTGTTCCAGGCGTCTTCCAGCGCCTCGATATG 151114 33 100.0 34 ................................. ATCAAAGGGAGGAAAGCTCCTAAGAGAAAAAACA 151181 33 100.0 34 ................................. AGCGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 151248 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 151315 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 151382 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 151449 33 100.0 34 ................................. TGTGCCGTTGCCGGACCCTCGGAAATAGTCATCA 151516 33 100.0 35 ................................. CCCCGCAACAATAAACTAAAAGAAAGGAAAACTAA 151584 33 100.0 34 ................................. CACTTTGACGTTGCCCCCGCCCTTGAGGATTTGG 151651 33 100.0 34 ................................. ACCCTTTAAGAATTAGGAACTTACGATTGTGTCA 151718 33 100.0 34 ................................. TAGACGCTGAATAACTACGCCGCCCTATAAAACC 151785 33 100.0 34 ................................. CCCGGACTTTTACGAGGATGCGGGCCTGTATGCT 151852 33 100.0 34 ................................. CGTCGCGCGTGCCAGGCCATGACGAGGGCGTCGG 151919 33 100.0 33 ................................. TCTTCGATGGCGCGGGCGAGAGCCCGCCATGCC 151985 33 100.0 34 ................................. GATATGCGGGCAGTCCTCGTATTTGACGCGGATT 152052 33 100.0 33 ................................. AACCCCCGGCACCCCCGGATACCAAGGAATCCA 152118 33 100.0 34 ................................. CCCGCCGAGCTATTGATTGCCTTGACGAAGTAAC 152185 33 100.0 34 ................................. CGGGCAAAAAAAGTGTGGCATCGTCAATACTGCT 152252 33 100.0 34 ................................. CGGGCAAAAAAAGTGTGGCATCGTCAATACTGCT 152319 33 100.0 34 ................................. CGCGGTACGGGCAACGGCACGAAAGAATACGGTG 152386 33 100.0 34 ................................. TACGAGGGGGCGGGCCTTTTCGCTTACATTGAGG 152453 33 100.0 33 ................................. GGCTCAATACACGGCAACGGCGGCAAGTGGCTT 152519 33 100.0 34 ................................. TCGCATGCGTGTGCAAGTCCGATTGTGGTTCCTA 152586 33 100.0 34 ................................. GGCCTGGCCGGTCAACTGGCTGATCTGCCAGCCT 152653 33 100.0 37 ................................. CCCGCGCATACTCATGACTTGCGCCCGTGTACGCGCT 152723 33 100.0 33 ................................. CCCGGTATCCGGGGGTGCAACGGAGACCGGGGA 152789 33 100.0 34 ................................. TTCACAGAAAACCCTGTATGAGCCGCAATCTGAT 152856 33 100.0 34 ................................. TATTGGTTTATTGTTGTTTGTTGTGTGGGGGCTT 152923 33 100.0 34 ................................. GATGAAATAAGCATAACGTCATAAGCTCCAATCC 152990 33 100.0 34 ................................. TATGAAACGCCAGAAGAAGAAAAATTAGCCCTAG 153057 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [153076] 153126 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= ===================================== ================== 35 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 692519-691839 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072053.1 Akkermansia muciniphila strain Akk14745a chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 692518 31 100.0 34 ............................... TTCACAAAAAACCCGATAGGAGCCGCAATCGGAT 692453 31 100.0 33 ............................... CCGTTGCATGGTTGCAATGGGATGACGCACAAG 692389 31 100.0 34 ............................... AACATTTCCGGCGGGGCTGACGGTGGAATAGGCA 692324 31 100.0 34 ............................... TCTTAATTTTGCGAACCAGATTCACAGTCAGTTT 692259 31 100.0 34 ............................... ATTTTCGGATTGTTGCTTGTCATAGTTGTGCAGG 692194 31 100.0 34 ............................... AAATGGGAGGGGGTACTTTATAATGATTGGCAGA 692129 31 100.0 34 ............................... CTCTGTTATTTACCCTACCAGGGGCGTTGAGACA 692064 31 100.0 34 ............................... TAAAAAGATAGTAGCTTGAGGCAGGGCATTTACC 691999 31 100.0 34 ............................... TCCAACAACCCTATAACAATATAAACATCATAGA 691934 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 691869 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 11 31 99.1 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //