Array 1 210638-208595 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHEM01000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N43482 N43482_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210637 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 210576 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 210515 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 210454 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 210393 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 210332 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 210271 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 210210 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 210149 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 210088 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 210027 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 209966 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 209905 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 209844 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 209783 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 209722 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 209661 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 209600 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 209539 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 209478 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 209417 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 209356 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 209295 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 209234 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 209173 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 209112 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 209051 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 208990 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 208929 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 208868 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 208807 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 208746 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 208685 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 208624 29 96.6 0 A............................ | A [208597] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 227911-226906 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHEM01000001.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM N43482 N43482_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227910 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 227849 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 227788 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 227727 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 227666 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 227605 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 227544 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 227483 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 227422 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 227361 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 227300 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227239 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227178 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 227117 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 227056 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 226994 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 226933 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //