Array 1 36089-34338 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHX01000001.1 Moraxella catarrhalis strain COPD_M16 NODE_1_length_320624_cov_22.9415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36088 28 100.0 32 ............................ TTGTCCTTATCTGATTACTGCTGGCATCTATT 36028 28 100.0 32 ............................ TGAGTATTTTTTCATCATTCTTCAATCTCCGT 35968 28 100.0 32 ............................ TTCAAAATAAAAGTTGCCCTTGCCACGCTCAA 35908 28 100.0 32 ............................ AGCCAACCATAAAACTCAATCAACCAACTACA 35848 28 100.0 32 ............................ GTTTTTTCACCAATGCCAAACATTGCTTTAAG 35788 28 100.0 32 ............................ AAAGGTACAGGCGGTAACGCTGGAAAAAAATT 35728 28 100.0 32 ............................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 35668 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 35608 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 35548 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 35488 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 35428 28 96.4 32 ..................T......... TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 35368 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 35308 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 35248 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 35188 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 35128 28 100.0 0 ............................ - Deletion [35101] 35100 20 71.4 32 --------.................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 35048 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 34988 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 34928 28 100.0 32 ............................ TACTTTAAATAATTGATTGTTCATAGTTTTAA 34868 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 34808 28 85.7 0 .......................CTTC. - Deletion [34781] 34780 23 82.1 32 -----....................... GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 34725 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 34665 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 34605 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 34545 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 34485 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 34425 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 34365 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 31 28 97.7 30 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTACAAGATACGCCCATCTTTTTGCATGACTCAGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTTAGGTCGGCAGGTTTGAGCGTACTCATGATGACACAAATCCATGTTTAATAATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //