Array 1 700166-700674 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDX01000001.1 Pseudomonas aeruginosa strain AUS526 IPC450_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 700166 28 100.0 32 ............................ ACAATTCGTCCAGCACCAGGACCGAACCAGGC 700226 28 100.0 32 ............................ TGTACGCGACCCTTGGGAAGTACTCAAGGATC 700286 28 100.0 32 ............................ TACAACCACGACGACGCGAGCATGTGGACGAT 700346 28 100.0 32 ............................ GTTCAGCGCTACTTCATCGACCTCCAAAACGC 700406 28 100.0 32 ............................ ATCATGTCGCAGGCCCAGGTATTCGCCAGTGC 700466 28 100.0 33 ............................ AGCAGAAAACCCGTTGGCTTTTCCGCCCCTTGA 700527 28 100.0 32 ............................ CGGAAGTCCGGGGCGTTCTCGCTGCTCTTGTC 700587 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 700647 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCCGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGTGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGGCGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 64344-65330 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDX01000008.1 Pseudomonas aeruginosa strain AUS526 IPC450_8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 64344 28 100.0 32 ............................ GTCTGCGATCTGGCGGATTGCCGGCTATGTGC 64404 28 100.0 32 ............................ TTTGCAGCAAGAACAAGCAATTTGTCGTCTAC 64464 28 100.0 32 ............................ AAGCGCTGTGGGCTGTCGCGTTGCGCTGCTCG 64524 28 100.0 32 ............................ TCGCCGACCGCGTTCCCCGTGCCGGGGTGCTG 64584 28 100.0 32 ............................ ATCCCGACGTGGGGCTGATCGACGCGAGCGCA 64644 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 64704 28 100.0 32 ............................ GCCATCACCACCAGGGTCTTTCGGGTCGGTCG 64764 28 100.0 32 ............................ TTCCCGGCGCACCTCGAGGCGCTGCGCGAGTG 64824 28 100.0 32 ............................ TACACCCTGCAGCGCCTCCAGTTCTCCGGCGT 64884 28 100.0 32 ............................ TGGGCGATCCGCCGTAGGCGGCCCCGGAGACG 64944 28 100.0 31 ............................ GGAAATGCAACAGCGTCTGCGCAACCTCAGA 65003 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGGGCGGTC 65063 28 100.0 32 ............................ AAGGACTTGGCCGGCTTGAAGAGCTACCTGGG 65123 28 100.0 32 ............................ ATCCGGCGCATGAGCGAACGCCCCTCCCAGAT 65183 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 65243 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 65303 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGTCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75204-73855 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXDX01000008.1 Pseudomonas aeruginosa strain AUS526 IPC450_8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75203 28 100.0 32 ............................ AAAGTAAAAGTCGAAGCCAGACTTCATACAGC 75143 28 100.0 32 ............................ ATGACCGCCTTCTACATCCTGCTCATCTTCGC 75083 28 100.0 32 ............................ AGAGTTCGTCGAGGACCAAGACCGAACCAGGC 75023 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 74963 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 74903 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 74843 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 74783 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 74723 28 100.0 32 ............................ ATCAGCAACAACGGTCACGCGGGTTCCCTGCT 74663 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 74603 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 74543 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 74483 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 74422 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 74362 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 74302 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 74242 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 74182 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 74122 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 74062 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 74002 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 73942 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 73882 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCAGGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //