Array 1 75954-74582 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYH01000013.1 Parasaccharibacter apium strain A29 A29_c9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75953 29 100.0 32 ............................. TGTATTCAAAAAAAGCGGCGCAGGCTCCTAAA 75892 29 100.0 32 ............................. TTCGCCGGGTATACAATCAGATTCTTCAGCAG 75831 29 100.0 32 ............................. GCATGGGGTACAACCCCGACAATATCCCCTAC 75770 29 100.0 32 ............................. AGGACCCTTCCACTCTACATTGTGCAGGGCAA 75709 29 100.0 32 ............................. ATGCCACGACAAGCAGTTCTGGTGGGAATATC 75648 29 100.0 32 ............................. GCGGCTTTGATGAGAAAATTATTAACTTACCT 75587 29 96.6 32 .............G............... CTCTGGTATCCTATAGGGGAACTACGGGTTGC 75526 29 100.0 32 ............................. CAGTACAATGGCAGATACGCCGGAGAAACGGA 75465 29 100.0 32 ............................. GACTGCGCCTCCTCAACCCACGCCACGTCAAA 75404 29 100.0 32 ............................. GAGATCAGGCGGTCAATTTTTTTCTCAGGGAT 75343 29 100.0 32 ............................. CTCAACAGATTTAAAAAGGTGCAGGGAGAAAC 75282 29 100.0 32 ............................. GCCAGCGCAGCTGCGGGGACGACTGTTGCGGC 75221 29 100.0 32 ............................. CGGACTGCCAGACCCGCTATTGAGAAGGGTGC 75160 29 100.0 32 ............................. CCATGCAACGAGCCGCTCCAGAAGGTCCATGC 75099 29 100.0 32 ............................. TGGCTCAGAAAATCGGGGTCCAGTCTGTGGCG 75038 29 100.0 32 ............................. TCAGGGCGGCGGCTGGGGACGGTGTTCTGGTT 74977 29 100.0 32 ............................. GCGTTGCGTGCTTCAAGGCCAGAACTGTTCGA 74916 29 100.0 32 ............................. TCAAAAACAACCATCTCGCTTCAGGATTAGCT 74855 29 100.0 32 ............................. CACCAATTCAGAATAGAGAAAAAAATCTGCCC 74794 29 100.0 32 ............................. ACCGTGCCCGGATTTCCATTATCCGGCCAGAC 74733 29 100.0 32 ............................. CTGGCCGTCATGGAGCGTATCCACGCCCTCGT 74672 29 100.0 32 ............................. CCGGCGGACACAGAGGTTTACTTCCAGCATGA 74611 29 93.1 0 ......................CA..... | T [74584] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 CTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : TCGTGTACTGCATGGCCCTCCTGCTGGAGCTGCTGCGGGGCAGGAATGAAAAAGGCGAGAAAATTGCGCTTCAGGAGCCGTTCCTGACGGCAGAACAGTTGAACATTGCTGCCTCTGACGATTTTGAGGCTTCCATCGGTCTGCCTGCTTTCGACAGTTGGCGTGATCTTCTGACCCCAGAGATTAAGCAGGAGATTGTGCGTGATCGGGAGCTGATCCGTCAGAAGGGTGTTCTGGCCAGCCTGCCCGTGTGATGAGGCGATGATCCGTTGAAAATTGATTGTGTGTAGAGAAAGGGAGGCTCCGGCCTCCCTTTTTCATGTTTGCTGTCAATCTTGTGGATAAAATTTGCTGGAGTGGTTTTTGGCTGTTCAGCGTCTCAACTTTCTTCTGTAAGGGCCGGAGAGGACTTGCCTCGGCGAGGTCATTAAAATTATATTTAATTCGGTAAGTTCTTTGACAATTAAAAAAGACTTATAATACAAATGGTTACAGGAAGT # Right flank : GTGCCAGACCGCCATCACTGGCCTGTACCGAACTGTTCGCCGGTGGGTCATGGGGTGGTTGGTGGCATATGTGGTCGCCAGAGCCATTCCAGAGCTTCGGGAAGGGTCTGTTCGATGGTGGGGCCATCCACATGCCGGGCATTGCGGGCAAAGACAAATTGGTAATCATAGCCCTTGTCGGCCAGCACGCGGGCCATGTTTTCCCCAGCCAGCACCCAGTCATGCATGCCATCAGGCATGGACGGAACGGGGTAGAACAGGTCCTGGTCGCCTACTTCGTACCAGATGTGCAGCGGGGCCAGTGGTGCCGCCGGGATGAGCGCCGCACCGGGATGGGGTGGTACGGCTTCCGGTGTTCCGGCCCATGGGGAGTGAAGCTGCCATCCCCCGCCGGGCAGAGCGGGGTCGTGCGGCCATTGCTGGTTGACCAGCGAAGGAGAGTAGGCCAGCACCCGGTGATAGAGGTTGGGCCGGAACCAGGCCATGGCAAAGGCCGCTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81-710 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYH01000027.1 Parasaccharibacter apium strain A29 A29_rep_c76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 81 36 100.0 30 .................................... TTTTGCGGCGTTTACCCTCACGTTCCCCAT 147 36 100.0 30 .................................... TTCCTGCCGCCTGCGGGCGGTTTTTTTGTG 213 36 100.0 30 .................................... ATGTCATGAAGCCACGCAGCCGCCTTGCGC 279 36 100.0 30 .................................... TCGATCCGGCGGCCGGAGAGCGGGGTGGGG 345 36 100.0 30 .................................... AATGAAATAGTTTCGTCCGTGAGAACATAA 411 36 100.0 30 .................................... CCCGTGAATCTTCCCCATTCGAGACAGGAA 477 36 97.2 30 ..................................A. CGTAGTTCCTGCCGACCCTCATCAGGTAAT 543 36 100.0 30 .................................... CGATCAGTCCGGTCCCCAAATCCTTTTTGG 609 36 100.0 30 .................................... TCCTTTTTAGGGTGGGGAACTGTGACAGAA 675 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Left flank : CGAAACAGATGGTGTTGCTATGATTTTCGATCGTAAAAACAATAAAAAATCATGCAACATCAATCTGTTACGCAAGAGCTA # Right flank : CCTTCCGCCGTGAAGCCCTTAGAGCAATCGAACCTACCATAGGCGAATCGCTAACCATCCAAGCGATTTGGAGCAATGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 25186-26007 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYH01000015.1 Parasaccharibacter apium strain A29 A29_c16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25186 29 100.0 32 ............................. AATTTTCGGAGACAAGCGGGGGAGCGTCAAAG 25247 29 100.0 32 ............................. CTATCTCGATAGGCTTTATCCCGCTCTAAAGC 25308 29 100.0 32 ............................. CCATCGGGGGGTACCCAAGAGGGGCGACGGTG 25369 29 100.0 32 ............................. TATCCGGTTGTCAGCGTGCCCTGCACGGCGGG 25430 29 100.0 32 ............................. CTTGTGCCTGCTTGTTGCCTGCCGTCTTGGGA 25491 29 100.0 32 ............................. GCCCAGAGGATCCGTCAATATCTCAGCGCCGT 25552 29 100.0 32 ............................. CTGCTTGACGGACATGGCCAGCGATTTTTGTA 25613 29 100.0 32 ............................. CATTACCTATTTCGTGAGACCTGGAATACCAG 25674 29 100.0 32 ............................. ACGACGGCGAGGTGCGCCTGGATCGCCTGAAC 25735 29 100.0 32 ............................. GCGGCGATTACTGGGCCGTTTCTGGACAGGCG 25796 29 100.0 32 ............................. AACACTGGCAGCAACGGGCAGACGGGCCCGGG 25857 29 100.0 32 ............................. GCCCTGGGCTTCCCGAAAGCCACCATGACACC 25918 29 100.0 32 ............................. ACCTTTTTTGATGCTCTGGCCCAGTTTCGCCA 25979 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 CTGTTCCCCGCCCATGCGGGGATGAACCG # Left flank : CTGGAGAGAATCATTCCGACCATTGAGCAGGTTCTTTCGGCTGGCGGTCTGCCTCGTCCCGAGCCCCCACCGGAGGCCGTGCCCGTCGCTTTTGAAGATGAAACCTTTGGCGATCCGGGGCACCGTTGATGCTGGTTGTGGTGGTCACCAATGCGCCACCCCGCCTGCGTGGCCGTCTGGCAGCATGGCTGGTGGAAATACGGGCTGGGGTCTATGTGGGCAGCTACTCCAGACGGACAAGGGAGATGGTCTGGGAGCAGGTACTGCTTGGCCTTGGGCCTGAGGGTGATGCTGTCATGGTTTGGCATGTTCCCAACGATCAGGGATATGAGTTCCGTACGGCTGGTCACAATCGCCGGATGCCGGTTGATTTCGATGGATTGAAACTGGTTGCTTTTCGACCGGAATAAAGCGAAGGAGTGAGGTATTAAATTCTGGTTTAAGTTGGTACGGTCTTTGACAATAAAAAAAGTCATGTCTTACAGTACGTTGCAGGAAGT # Right flank : GTCTTCATGAAAGACTCCCTGGGAACAGCTGGGGATCAGGGGAAAGTCCTTAAAAAACTTGAGGAACAGCGCAAAGAGGCCAACATCCTCATATTGAGGATGCCGGGGTATAAATCAAGCGAAGTCACCCTATCCGGCTACGAGTTCGACCGCACATCTCAATCAGGGTGCGATCTTCTGGTCGTCCGAATGACTTTGCAGGAAGTGCGTTTCGGGGCGAAAAAACGGGTGGTAATGAAAAATTGGACACCTGTTGAAGCCGACAATATGGGGAATAAAATCCCCCAGAAAATTAGCGGTTAATTATTCATCCCCTAGCGTGAAATCAACCTCTGCTGTCCCGATACCATAGTTATTGATCTTTATGTCAAAATCTTCTGATGACCAGCACTTTGCGGTGACAAAATCCTTAGCTGATTTAATTATGTCATCACCAGTACCTTTTGGAGAAGAAAAATGGCATGAATCTGCCCGCCAGTAATTATCATTACCTTTCTGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //