Array 1 17707-16885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEQ010000002.1 Escherichia coli strain 82CH scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17706 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 17645 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 17584 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 17523 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 17462 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 17401 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 17340 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 17279 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 17218 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 17157 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 17096 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 17035 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 16974 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 16913 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGMTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 127481-125622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEQ010000014.1 Escherichia coli strain 82CH scaffold_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127480 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 127419 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 127358 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 127297 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 127236 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 127175 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 127114 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 127053 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 126992 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 126931 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 126870 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 126809 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 126748 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 126687 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 126626 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 126565 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 126504 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 126443 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 126382 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 126321 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 126260 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 126199 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 126138 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 126077 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 126016 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 125955 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 125894 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125833 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 125772 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 125711 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 125650 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //