Array 1 1392-2740 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAG01000027.1 Pseudomonas aeruginosa strain PA-W49 IPC25_27.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1392 28 100.0 32 ............................ GAACGCGGAAAGCTGGCCGAACTGCTGGAGGG 1452 28 100.0 32 ............................ CTGGGCGATCTGCAGGTGCCCATCCTGAATGT 1512 28 100.0 32 ............................ TGGAACACACCGAGGGTCTCGCGCAGCGACCG 1572 28 100.0 32 ............................ AGGTCATCCCGTTCGGGTTTGCGATCCTCGAC 1632 28 100.0 33 ............................ CTGACGATCAACAAGACTCGGCAGCATGTACTG 1693 28 100.0 32 ............................ TCGCAGAGCGCCGCGCACAGACAGTCGTCTGT 1753 28 100.0 32 ............................ AAACGACTTGCGGTCCCGGCTAAGGCATGGGC 1813 28 100.0 32 ............................ TCTGGCTAATGACGCTTCTGAAATGGCCCCCG 1873 28 100.0 32 ............................ TTGAAGAAGTCGGAGTCTTCGCCGTAGTCCGC 1933 28 100.0 31 ............................ GATCGATCCGGGCGCGCAAGCCCAGGGCCTG 1992 28 100.0 32 ............................ GAATGGAGTTCCGCTGGTGTGCGCCGTAACGC 2052 28 100.0 33 ............................ TACATCAAGTCCGACAGCACAACGAGAGACTAT 2113 28 100.0 32 ............................ GACAACGCCAGGGCGTAAAGCTGCGGCGACAC 2173 28 100.0 32 ............................ ATGACGTCATCCAGTCGCTGGTCGATGGCCTT 2233 28 96.4 32 ............A............... GCCATCGCCGCCGCCCGTTCCGCCATCACCGC 2293 28 100.0 32 ............................ ATGGTTCGGCAGCACTCAGACGGTTTCGCTCA 2353 28 100.0 32 ............................ TGAACGCGATTCGGGAAATCGACATTGAACAC 2413 28 100.0 32 ............................ AGTACGTGGAGCAGGCCGCCAAGACAATCGTC 2473 28 100.0 32 ............................ AATCGAAAACATCAGCGTCACAATCAATGCAC 2533 28 100.0 32 ............................ TACTGGCTGATTTCGAAAAGCACACTCGCTTG 2593 28 100.0 32 ............................ AGGAGCAACGAGCGGGACAGGCGCCCAACTTT 2653 28 100.0 32 ............................ TGATTTCAACTACCCCGCGTTCAACGCCGAGG 2713 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACAATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11774-11266 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAG01000027.1 Pseudomonas aeruginosa strain PA-W49 IPC25_27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11773 28 100.0 32 ............................ TATTCGACGTACAACCAGTACCGCAATTTCAG 11713 28 100.0 32 ............................ CGGAGAAAGTCACGCGCTTCGAGACGCACCGG 11653 28 100.0 32 ............................ TGGAAGAGCCGCACCGAGGTGGAGGTCTTCAT 11593 28 100.0 32 ............................ ACATGAGGAAGACGCCGAGGCCGAAGACGTGA 11533 28 100.0 32 ............................ GCTCGCGGTGCTTGTCGCATCCATCACCGTCG 11473 28 100.0 32 ............................ GATGGGGGTGACAAGTCGGCCGACGTTGAAAG 11413 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 11353 28 92.9 32 ............A...........A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 11293 28 71.4 0 T.........ACA....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGATTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //