Array 1 20410-23981 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKQK01000042.1 Acinetobacter junii strain TUM15349 sequence042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 20410 30 96.7 30 .............................C AATATTTCGAACAAGGTTGATTTTGTTTTT 20470 30 96.7 30 ............................G. AGCGCGTGACTAGATTAAAACTAAACTATT 20530 30 93.3 30 ............................GA CAAGTTGACCATTGGAAAGAGTCATGCAGC 20590 30 96.7 30 .............................G GTTCCAGGTCTAACACCAGGTGAATTTATC 20650 30 93.3 30 ............................AA TCAATTGCTCGACAGCAATTGAGAGAGCGT 20710 30 96.7 30 .............................C GTTGCAATATCAATATTTTTGTATGGTGTT 20770 30 96.7 30 .............................G TTACAGAAGTTAGCATTTTTTTTCTCCTTA 20830 30 93.3 30 ............................AC AGTCATAAATAGATAAGATGTTAAGATTAC 20890 30 93.3 30 ............................AA TTCCGTGACAATCTAAACACGTTGCTTATG 20950 30 96.7 30 .............................G ATACAAAAGCACCAGTAGCAATGGATTCAT 21010 30 100.0 30 .............................. TGCTTTGTAGTCTGAAATACGTTGAACTGA 21070 30 96.7 30 .............................A CTTAACCAAACAATTTGCAACAGCCCAAGC 21130 30 93.3 30 ............................AG TATAGTGATCGGGTAATTTTGTGTCGTATG 21190 30 100.0 30 .............................. TCTGGGTGTATGACGCTTTCTTCAGGCAAG 21250 30 100.0 31 .............................. AGACCGCAATTCTTTGGGGGGTAAGCACCTC 21311 30 96.7 30 .............................G TTGTTCGCTCGTAGACACTCGCTCTGTTGT 21371 30 93.3 30 ............................AC TGGTAAGCAATGTAATGCCTGCACCTTCTA 21431 30 93.3 30 ............................AA GCTGCTTTCGATCAAGTAGCTAAAATTGTT 21491 30 93.3 30 ............................GA AACAAGAGTTACACCAGCACCGATTAGAAC 21551 30 100.0 30 .............................. TCCTTGATTACAAAATCCTCCTATCAGCTT 21611 30 93.3 30 ............................AA AAGACCCAGCTGCACCTGATTCTGGAACAA 21671 30 96.7 30 ............................A. ATCTGTGTAATCAGACGGCAGAGATTCATA 21731 30 100.0 30 .............................. GCCGTTCGGATTTTTATGCAAGTTCTGGAG 21791 30 100.0 30 .............................. GAGGTGTTGTTCTCCAGTCGCAGTCTGGAG 21851 30 96.7 30 .............................A CTGACCAATTTGACTATGGAACAAATTTAA 21911 30 96.7 30 ............................C. AAAAAATCGGGCGTCAGATCGTACCATTTG 21971 30 96.7 30 .............................G TGGCGGTGAATTGTTAATTCTTGAACAATA 22031 30 96.7 30 ............................G. CTTGATTAAAATATCTTCACTTAAAATAGG 22091 30 96.7 30 .............................C TTTGCACAGAATGCGTCTAAAATCGCTCAT 22151 30 96.7 30 .............................C TTGAAGTTGCAAAAGCAGCGCTGGATGCGA 22211 30 93.3 30 ............................AC GTCAAACGAGTTAGCAACAGTCATCAATGC 22271 30 100.0 30 .............................. CAATCAGAGCTTTTTGAAGTTGCTCAAGAA 22331 30 96.7 30 .............................C AAAAGTAAAACTAGATTTCTCTGCATCGAT 22391 30 93.3 30 ............................GA TCTCAAAGAATCAGGTCAGATCGAACAAGA 22451 30 96.7 30 ............................A. TAATCTGAACATTGGCTGGTGGATATGGTC 22511 30 93.3 30 ............................GA CTCAAGTTCTTCTCTCTTGTTCTTTCTGAT 22571 30 93.3 30 ............................GC ATTGTGGCCCACTGCGCCAAAATGCTTTGC 22631 30 96.7 30 ............................A. CGCGCTCAACTATGATCATCTGATAAGTGA 22691 30 93.3 30 ............................CA ACCACCCTCGCCCTTATCACCGCCAAACAA 22751 30 93.3 30 ............................AA CGTAAAAATTGATCTGCTGCACCTTGATAG 22811 30 96.7 30 ............................G. AAAGAATTAGTCCTAAATTGTCCTGTAAAT 22871 30 96.7 30 .............................C GATTTGAATCTAAAATAGACTCAGTCAATT 22931 30 96.7 30 ............................A. ATAACCAATTAATTGGTTGTTTCATGAGTT 22991 30 96.7 30 .............................C AGAGCGCAGCACAGCAAATGGCACAAAACT 23051 30 96.7 30 ............................G. TACAGCGTAAAATATGGAATTTTAAAAATC 23111 30 93.3 30 ............................CG AGCTGCTGCTAAGTAATAAAAAGGGGGTTC 23171 30 96.7 30 ............................G. TGATTTGTACAGTAATTCGCTTGTTATTAT 23231 30 100.0 30 .............................. GTGCGAACAAGGACTGGATTATTAAATCCT 23291 30 93.3 30 ............................AA GCCAAAGCGCATGAGGTGGCGAATCTGAGA 23351 30 93.3 30 ............................AA CACTCACCCAAATTAGAGCAGCTTTGCAGA 23411 30 96.7 30 .............................C AAGATAAAACTTATCGCGTAGCTGATCAAG 23471 30 93.3 30 ............................GC TTGAAACTCTAGCTAATGTTTGTGATTTTC 23531 30 93.3 30 ............................AA TGATTCAACTGCGTCCAATAATGGGGATTA 23591 30 96.7 30 ............................A. TAACAACAACTACAAGCGACTTATTCACTG 23651 30 93.3 31 ............................AA ATTGGAGCAATACTGAAACCTATCTGACTGG 23712 30 93.3 30 ............................AC ACATTAGTCAGCCTCCTTCGTAGTCCATCC 23772 30 96.7 30 ............................A. ATATGAAATAAGTAAAATAACAGCGAGTAA 23832 30 100.0 30 .............................. TAGCTAGAAAAATAGAAAATGCTTATAACT 23892 30 96.7 30 .............................C GGGTTGAGCAATTTCTGTAGTGATTGGCTC 23952 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 60 30 96.0 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GTAAATGGCTAGAACGATTCATTGATTATGTTCATATCATTCAACCGAGAGAAGTACCTCAAGCTAAAGTTACTGGTCATGCACACTATTATCGAGTCAATCCAAAGATGAGTGTTGAAGAGCGTATAGTTCATCAAGCGCAACGTCGAAATATTTCTTTGGATGAGGCTACGCAGCATTTTAAACAATATATTGAAAAACCTATTATTGAGCCTTATGTGAGTTTAAAAAGTCTGAGTGCAAAACGAGATCAAAATATAGATCGACCATATCGTTTATATATTGGTAAATCTCTAGTTGATGAGGCAAAAGATGGAGAGTTTGGAACGTATGGACTAAGTCGAATGGCAACAGTTCCAGAATTTTGACCCAATATTTTTTTACTATTTAACAGCTTAATAAAATCAATAAGTTACACCAAGTCGTTTTTTGATTGGGTAAATTGCTAAAAAACCATCATAAATACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : GTGAAAACTAGTGAGATC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8-1538 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKQK01000079.1 Acinetobacter junii strain TUM15349 sequence079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8 30 96.7 30 .............................C TCGGATATGCACCTATCTTTTTCATTGAGC 68 30 93.3 30 ............................GA TTAGGGCAATGGCTGGCGATTCCACATGGG 128 30 100.0 30 .............................. AAAATAATGATTGGAGACAAACGCCCGATG 188 30 93.3 30 ............................CA ACAGCAGTTGATTTATTACCACCAGCTTTC 248 30 93.3 30 ............................AA TGATCGAAATGTTCAACCGTGAATCATGTC 308 30 93.3 30 ............................AT CTGAAATAATCAAACGATAAAAAGCATAGA 368 30 96.7 30 .............................A AAAAATTATGGATGATAGTTGCAGCTATAA 428 30 96.7 30 .............................T GTGACTATGGCCGATTACAAGCCACGGGAT 488 30 96.7 30 ............................C. GGAGCCGCTTCGATGTGAAATCGTCTTGCT 548 30 93.3 30 ............................AA GCCGCCGAGCCGCCGTACATCCCGATTGTA 608 30 93.3 30 ............................GT TGGCTAATGCCTGTAGCGTTTGGATCGGTT 668 30 93.3 31 ............................AT AAAAGCCCCGATTAATTGGAAAGGGGGCGAA 729 30 93.3 30 ............................AT CAACTGGGGCAGCCTTGAGGACTGGAACAA 789 30 96.7 30 .............................T GTTTATCCATTACTAACCATTTCATAATAC 849 30 93.3 30 ............................AA AAGACCCAGCAGCTCCCCAAGCTGGTACAG 909 30 96.7 30 .............................T TTTACCCTGTCAGAACGATCTACACAAACA 969 30 93.3 30 ............................CA AGGCAATGCGCAGGGAAAAGGTCTAACACC 1029 30 100.0 30 .............................. CGCAAATTGGCGCTCAATTTATTCTTGATG 1089 30 96.7 30 ............................A. CCATTTCACGGTACATTTGCACGTCTTTGT 1149 30 100.0 30 .............................. ATAATCGCCGTTGCTTGCCATACGGATTGC 1209 30 93.3 30 ............................AC CGCTACACGCTGAGCATCTGTTAGCGAATA 1269 30 96.7 30 ............................C. CCACACATAGAACGTAGTCAGTGAGCGCAT 1329 30 100.0 30 .............................. TACATACTGGATCGAGTGGAACAGCAAATC 1389 30 96.7 30 ............................A. CAATTCATGGTATGGGTTTTATTAGCGAAT 1449 30 90.0 30 .............C..............AT AAAGCAATATTGACCAATAAAAGTAAGCGT 1509 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 26 30 95.5 30 GTTCATGGCGGCATACGCCATTTAGAAATG # Left flank : ATCACAAG # Right flank : ACATGTGATTTATTCATATGAGCCATTTAGAAATGTAACGGTCTTGATTGGCATTTGTTCTGTGTGTTCATTACGGAATTTATTTTAAGAATTAATAAGTGACTTATAATTCTTGTTCCAAAATTATCGTGTTATATGTCATTTAAAATACATAACATCAAGAAATATGATTCTTACTACATTCTAGATCTTTAATTTTTAAATAAGAAAATATACCCTGAAACCAACGTTTTTTTAGTGAAATTTTCATGCGCGGTTTATACCTCATCACCAATGATGATCCCATTCAACTTCTTTTAGAAAAGTTAGAGGCTGCACTAGCTACTGGTCATATAGCTATTTTGCAATATCGTCGAAAAAAAATAGAAAAAATAAATCAACCATCTGAAGTGGAGTTGATCAAAGTCCTTTGTGAAAAATATCAAGTCCCTTTTGTCATTAATGATGATTTGGCGTTAGCAGAACAATTTGGTTTAGGTGTGCATCTAGGGCAGTCCGAT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //