Array 1 997570-999307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019509.1 Aquaspirillum sp. LM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 997570 29 100.0 32 ............................. ACGCCCTTGCACGGCAGGTCACAGGTATCTTT 997631 29 100.0 32 ............................. TAATCGACAATGCGCACTATGTAACCCATTTC 997692 29 100.0 32 ............................. GTAGGGGCTTGCTTGTTGGTGTGAGTGTGTCA 997753 29 100.0 32 ............................. GACGTTGGCATTTGACACTCATGTCACGGATG 997814 29 100.0 32 ............................. CATTCTCTCCGTCCTGACAGTTATTTTCATCT 997875 29 100.0 32 ............................. AATATTACATGGAAATTACTACTGCTGTGTTT 997936 29 100.0 32 ............................. GCAAGCGCTTTGTAAAAAGCCTTGTGGAAAAA 997997 29 100.0 32 ............................. AATGGCTTGACCACAATTATCCGACTGCTTGA 998058 29 100.0 32 ............................. AGGCAAAATGATTGATGAGCAAAATCGTCAGG 998119 29 100.0 32 ............................. CATGCTTTGCAGTCCGAAATATTGCCCGGCGT 998180 29 96.6 33 ............................A GGCGGTGAGGGAAACCGATGAATAACCAGAAAA 998242 29 100.0 32 ............................. CACCACAAACATGTCGCCAATGCCGTCTTTGA 998303 29 100.0 32 ............................. ATTTATCATTCTCAACTGCTGAGGAAACCATG 998364 29 100.0 32 ............................. GGCGCTCAGGCTGGCGCGCCGCATGTATCCGG 998425 29 100.0 32 ............................. TCGATCACCACGCCGCAGCATGTTGATGTGGC 998486 29 100.0 32 ............................. CTTTGGCAGATGCCTTCGATACAACTACATCA 998547 29 100.0 32 ............................. CATCAACTTTGCATTTGAAGCACAATTGCGAA 998608 29 100.0 32 ............................. CCATGCGCAAAACTTCTTTCTATTACTGCACC 998669 29 100.0 32 ............................. ATGCCCTTGCACGGCAGGTCACAGGTATCTTT 998730 29 100.0 32 ............................. AATCTTCAAACCAGTCCGACGCGCTTTGTTAT 998791 29 100.0 32 ............................. CCACAGCGCAAGCGGCTTCTGAGTTGCTTGGA 998852 29 100.0 32 ............................. GCCTACTACGATGCCAAAAATCAGGACGTGGC 998913 29 100.0 32 ............................. GAGTATATTAATGGCACACATAGTACTAAGTG 998974 29 100.0 32 ............................. GGGCGTCATCATGGGTACTGAATGGACGTTAC 999035 29 100.0 32 ............................. TAACCATGATTGGCTGAAAGTATCTGAAATCA 999096 29 100.0 32 ............................. CCTTGACAACGCTGCCACAGACAGGGCAGTTC 999157 29 100.0 32 ............................. AGCCTTCAAAAGCCCTACCAGATGCCTACCTG 999218 29 100.0 32 ............................. GACCCTATCCCAATCTGCCTCCGAGAGGATCA 999279 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGTCAGCGGGGATGAACCG # Left flank : GACATCCTGGCCGCCGGCGGCCTGGACGTACCGCAGATTGAAGGGGTGGTGGAAGCCGCCATACCGGAAGAAAAGGGGATCGGCGATGCTGGTCATCGTGCTTGAAAACGCCCCGCCCCGGCTGCGCGGGCGCATGGCCATCTGGCTGCTGGAAATACGCGCCGGGGTGTACGTGGGCACTTACAACCGCAAGGTGCGCGAATACCTGTGGCATCAGGTGGAAGAAGGGCTGGAAGACGGCAACGCGGTAATGGCCTGGCAAGCCAGCACCGAAGCTGGGTTCGAGTTTGTCACCCTGGGCAAAAACCGGCGTATGCCGGTAGAATTCGACGGTGCCCGGCTGGTGTCTTTTCATCCGCCGGACAGCGCAGATCAAGGGTGAAAAGATGCTCTTTAACAGCCTGAAATCGGCTACCTTGCCTGCCTAAAAATTGACCAGAAAAGTTGGTAGATTTTGACGTAGGTGAAAAAGCCTTTTGGATCAATGATGTATTTTTAGT # Right flank : GAATTCTTGACAGGCTATTAACTGTGTGATTCCATTTCTATTTATAAATTGAATTAATTATCCATTCCCAGCCGGTGAGGCTCTGCATCTTTCCCGGCTGGTTTTCCAACTGAGCAAGGCCCTGTTCCAAGTGGGCTTCCAAGGCCTCCAGGCTATCGAAGGCTCGGTTGTGGAAGTACTTCTCGCGCAACTCATCCCACACGTGTTCCTGCGGGTTGAGTTCCGGCGCATAGGGCGGAAGGAAGATCAACCTCAAGTTGTCCGCCAGCTGAAACGGACTCTTGTGCCAACCGGCTCCATCCAGCACCATCACGATGTTTTCGTCGGGGTAGCGCCGGGCAACCTCATCCAGAAACAGCTGCATGCACTTGCCGTTCACCTGCGGCAGGATCAATGAGTCGAAACGCCCATCTGCCGGACTGATCGCACCGTAGGCATAGACATATTGCTGTGTCACCATGGCTTTCACCACGGGCCGATGCGGCTTTTTCTGCCAGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1000465-1001594 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019509.1 Aquaspirillum sp. LM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1000465 29 100.0 32 ............................. CAATTGCGCCTGTGTATGACCATCACAGGTAA 1000526 29 100.0 32 ............................. GAACTTTGAAAATGGATAATGTCTTGAATAGG 1000587 29 100.0 32 ............................. GAGATGGTGGTAAATTTCCACATGGTACTGTT 1000648 29 100.0 34 ............................. ATTCGATTGTATGAGAAAGCATGGGAAATGTAGT 1000711 29 100.0 33 ............................. CTGGACAGTTTATTATACGGAGCCCGGCCAAAA 1000773 29 100.0 32 ............................. TAGGACTAGGTTTCAACTGGGTAGTAAGGCTT 1000834 29 100.0 32 ............................. ATGTATTTGGAAGACGAGAAGATGCGATCTGT 1000895 29 100.0 32 ............................. CACGTTATGAATTGCTTGTTCCGTGCCTTGCA 1000956 29 100.0 32 ............................. AGCGCGCAAGAAAATACGGTGGAAAGCCTTCT 1001017 29 100.0 32 ............................. ACTCAGCGTCCGGAAAAATCCCGTGGCAAAAG 1001078 29 100.0 32 ............................. ACCGTCTGGGTCACCGCCGCCAAACGGTTTGG 1001139 29 100.0 32 ............................. CATTAGTTTACGCTGCGCGTCAATAGGCATTG 1001200 29 100.0 32 ............................. GCATTTGCCGAATTTAGCACCGCCACCGGCCA 1001261 29 100.0 32 ............................. CACGTCCACGTTTTGCAGCCCGACAAACACCG 1001322 29 100.0 32 ............................. GCGTATGACCATGATGTGGCCAAAAACAAACC 1001383 29 100.0 32 ............................. ACAGCTACACGATCTACTGCCAGGGCCTGGTG 1001444 29 96.6 32 .................A........... AACCGCTTGCCAACAACCGAAGGGGCAAACGC 1001505 29 96.6 32 .......T..................... TCGTCACCATGACCTGAGAGGGCCATAATTCA 1001566 29 96.6 0 .....................G....... | ========== ====== ====== ====== ============================= ================================== ================== 19 29 99.5 32 GTGTTCCCCGCGTCAGCGGGGATGAACCG # Left flank : TCCGGAGCCACTTTCCGCCAGCCATGGCGCGCCAGCATCGCATAAATGGTGGAGAGCGCCAGCGGTTTGCCCAGCTTGGCCTCGATGACCGGCTTGAGCGGCGGCACGATCACCACTCCGCCGGTAGCCGCCTCGGTGAGCGCCTCATCCAGAATCTTGGCCTCTTGCTCCAGGCTGGCCTTGGCCCGGTTGCGCAGTTCGCGCTTGCTGCGCTTGGGCCTGGCTTCGCCAGCCTGCTCCCGGCAGAAATTCGTCCGCAACGTACAGGTTGCCCCGACCGAACGACCAATGATTTGAGCCGTCTGCTCGATGCTGAGGTTGAACAGCAGTGGCAGCGCAACCGCCTGAGCGGTGCGCAACTCTTCTACTGTCTTTGCCTTTTTCAGCAAATCTTGAGCCTGTGCCAGATGTTCCATCCCGCCCGGAAGCCGTGCCATGTTCATCTCCATCGATAGGGTGGAGATATTATTTCATTTTATATCTGTAATTGGAATGAGTAG # Right flank : GGGGCAATCGGCGTCTGCCTCCCGCGCTCACTGTATGTGGGGATTGCACTGGCCGGGTTGGACTCGAACCAACGTCACCACCGGCGCATTGCTGCGCCGCCGTCCCGTCTACCTGAATGGGGCTCTACGACCAGTGCGGTTTTATTGTACCGACCAGAACCATGTTCGGCCATAAAATCGACAACCCTGAAGCCCACCTCAAGGGGAATGCACCGCCAAAATCCCCCTACGCCCGTTCCAGCACCACAAATGCCAGGCACTGGCTGCGTTCGTCGCTGATGCTCAGGTGGCAGTGAATGATGCCGCGCTGTTGCAGCCAGCTGGCCAATTCGTCTGAAAACGCCCAGCCGGGGCGGCCCAGGGTGTCGTGGGTGACGGCCAGCGCGCCCAGGGTCACCGGGGCGCGCAGGCCGGTGCCGGCGGCTTTGGCAAAGGCTTCCTTGGCGGCAAAGCGTTTGGCCAGCAGCCGGGCCGGGTCGTGGGCGCTGGCCCAGTCCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1176383-1180276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019509.1 Aquaspirillum sp. LM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================= ================== 1176383 28 100.0 32 ............................ GCCCCCAGCCCCTCACCCCGCCAGGGCGCTGG 1176443 28 100.0 32 ............................ TTCACCGTCCGCCGGCGCTGGCCAGGTTCGCC 1176503 28 100.0 33 ............................ CAACCGTCCCGAACTTCTGGCCGCTCCTTATCT 1176564 28 100.0 32 ............................ GGCGGGCAGCGCCCGTGGCCGAAGGCCAGCGC 1176624 28 100.0 32 ............................ CGACGTAATTCGCTTGCGTCTGATCATTCGAG 1176684 28 100.0 32 ............................ TTGCATTTCATGGCGTCCGGAACATTGATGGC 1176744 28 100.0 32 ............................ GCCCCGGTCGATTTATCCACCGCTGCCGGATA 1176804 28 100.0 32 ............................ TGGCGGGGTGAGGGGCTGGGGGCGAGCGCAGC 1176864 28 100.0 32 ............................ GTTATTGCAACACCCTCGGCCACCCGCACTTG 1176924 28 100.0 32 ............................ CAATGGCGACGTGGACGCCCCTGGCGTGTATG 1176984 28 100.0 32 ............................ GCCCCGACCGCCCCGACCGCCCCGACCGCCCC 1177044 28 100.0 32 ............................ CTGTTGACTCTCACGCTCTTGGGTTCTTTGTC 1177104 28 100.0 32 ............................ TGGAGCCGGGCACGGCGTCGTAAAATGCCGGC 1177164 28 100.0 32 ............................ TGCCGCCGACGTGATTGGTCTGGCCGCCGCAA 1177224 28 100.0 32 ............................ TTCACCGTTCGCCGGCGCTGGCCAAGGTTCGC 1177284 28 100.0 33 ............................ CGGCGCTGCCGTGGTCTACCAGGCGGTTTCACT 1177345 28 100.0 32 ............................ TTATCGAGCTCTGACGCAGAGTAAAGCGGCAT 1177405 28 100.0 32 ............................ GCGAGCCAGCCGACCTGAAGGTCTATGCTGAC 1177465 28 100.0 32 ............................ CACACCCAGGCGGCGTCCGGCGCGTCGTGCTC 1177525 28 100.0 32 ............................ AATTGCTAATGCGCTATTTGACTGTGCTGTTA 1177585 28 100.0 33 ............................ TAATGCCGAATCGCGTCTAAGTTGAATTCTTTC 1177646 28 100.0 32 ............................ ATCGCCCAGGCGCACGACAGCGGGCTGATCGA 1177706 28 100.0 32 ............................ TGGCCCCCGGCTCGCGCGCCATCCTGATGGCT 1177766 28 100.0 33 ............................ AGCACCATCAAGTGCTAGCGCAATGTGCCTGTT 1177827 28 100.0 32 ............................ AGCCCGCCAGCGCTGCCGACACGCACAGATAC 1177887 28 100.0 32 ............................ TGGCAGTTGCTCTGGCCGGCGGCCATGCTCAA 1177947 28 85.7 6 ........................TGTC CGCGCA Deletion [1177981] 1177981 28 100.0 32 ............................ AGCAGCTGGTCGAGGATGTTTTGCTGATAGTC 1178041 28 100.0 32 ............................ ACAAACTGCCCAGGCCATCAAACGCAGCATTC 1178101 28 100.0 32 ............................ GCCGCGCCGCACTGCGCTGACCCAGCGGCATG 1178161 28 100.0 32 ............................ GCAGAGGCCGCCGCCCAGTTTGAAGGCATGGC 1178221 28 100.0 33 ............................ CAGACTGGGTTGATTTACGGCCAGCGCTGTGCA 1178282 28 100.0 32 ............................ TGGCTGCATCAGTCGCATGCTCCTTCACGCAG 1178342 28 100.0 32 ............................ AGACGGCACTGAGCGCGATTACTGGCAAGGCC 1178402 28 100.0 32 ............................ ACCAATTGCCGGCTGGCAGCATTGGAAATCAC 1178462 28 100.0 32 ............................ GTACTGATCTACGACGAGCCCAGCGGCGCGGT 1178522 28 100.0 32 ............................ GATCACCTCGGCCATCCGCGCCGCGCGAATTT 1178582 28 100.0 32 ............................ ACGGAAAGCAGCAGCAAACAGGTCTTGATAAG 1178642 28 92.9 145 .........................GG. CGCGCTGATTTATTCAGAAAAATCGTGTTTGCCAAAAGCAAAACCCAGCAAAATCAACATCCTGGATTCCTACCTTCGCGGGAATGACGATTTTTTCAGCGTATCCTTAGAAAATCGCCACAAGGATCACTGGCAGCTTTGCCGG 1178815 28 100.0 32 ............................ AGCAACTGGGCAACACCCCCAGCCAGACCATT 1178875 28 100.0 32 ............................ TCAGGTGCCGTGCAGAATTTTAGTGGGGGGCT 1178935 28 100.0 32 ............................ AGTCCGGCTTGAGCCGAACGACTCTTCTGGTC 1178995 28 100.0 32 ............................ ACCCTGCGCAGGGTGCTTGCGGGATATACAGC 1179055 28 100.0 32 ............................ CGCACCAGGCGCAGGCCGGGGCGCTGGGCGGC 1179115 28 100.0 33 ............................ AGCGACGCAAACGCAGCCGCCATCTTGATAATT 1179176 28 100.0 32 ............................ ACGCATATCTGTACAAGGTGCTGGCCGGCGGC 1179236 28 100.0 32 ............................ GATACCCATCACATGGACTGAGCTGTCGGCAT 1179296 28 100.0 32 ............................ ATCAAAATCAATGGCACAACGATTGAGTGCTG 1179356 28 100.0 32 ............................ AGCCGCTCAGCTGTGGTCTGGATATCCTGGCC 1179416 28 100.0 32 ............................ CCTAGCCTGCGGTGAACAGGTCAGTTGACGTA 1179476 28 96.4 32 .............C.............. TGTGGGTGGTGCTGGTGCCGGAATCTGAGTAC 1179536 28 100.0 32 ............................ TAAATGAGCAAGGGCGTCGGCGGCACGGTCGG 1179596 28 100.0 32 ............................ AGGCTCGTCGTCGCCACCGACCGGCTCACGGT 1179656 28 100.0 32 ............................ GCTTGATCAGCTCGCGCAGCGCGGGCAGCTCA 1179716 28 92.9 145 .........................G.C GCGCTGATTTATTCAGAAAAACCGTTTTTGCCAAAAACAAAGCCCAGCAAAATCAACACCCTGGATTCCCGCCTTCGCGGGAATGACGATTTTTTCAGCGTATCCCTTAGAAAATCGCGTCATACACAGATGCGAATGCAGTGTC 1179889 28 100.0 32 ............................ ACAAGAAGCAGTAATGGCTTTGGCCCAGACCC 1179949 28 100.0 32 ............................ TATTTCGGTAGTGCTGATACCTTTGATCTGAT 1180009 28 100.0 32 ............................ ATCTCGGTGGCCAACTGTTCCAGAGCGTGGGA 1180069 28 100.0 32 ............................ ATCTCGGTGGCCAACTGTTCCAGAGCGTGGGA 1180129 28 100.0 32 ............................ TGTCAGTCTGTGATAAACGCAATGCTCAGCTG 1180189 28 96.4 32 ...............A............ GTCCGCAGCCGCACAGCTTTTTCGGCCTTTGA 1180249 28 85.7 0 ..G................A...C.G.. | ========== ====== ====== ====== ============================ ================================================================================================================================================= ================== 62 28 99.2 35 GTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTGATGGCCCAGCCGTGGCTTTCTGGCATGCGTGACCATGTTAACCTCAGCGCCATCACCCCCGCCCCGGCCAATGCCCCGCACCGGCTGGTGCGCCGGGTACAGGCCGACAGCAATCCGGAGCGTCTGCGTCGCCGGCTGTGCAAACGTCACACCCTGAGTGAAGAAGACGCCCGCCAACGCATCCCCAACCGCGCCGCCCACTATCTGGAGTTGCCCTATGTGCAATTGCGCAGCCAGAGCACCGGCCAGCACTTTTTGCTGTTCATCGACCAAGGTGCCAACCTGCCAGAGCCTTGCCTGGGTGGCTTTAACCGCTACGGCCTGAGCCAGGGTGGCAGCGTGCCCTGGTTCTGACTCTGCGCCGACCCTTTTTTTTACCAGGGAATTCGGTGCTAACAAAATCAAGCACTTAGCGACTTGGTGAAAAAAAGGGGGTTGGCGGGCTGGTCCAATGGAATGGTTGGTGTAACAATGACTTAGCGGAAAAGTGCTCTA # Right flank : ATGCACTGATTTATTTCAGAACCCTCCAATTGCTTTTGCCAAAAGCAAATCCCAGAAAAATAAAAACCCTGGATTCCCGCCTTCGCGGGAATGACGCTTTCCCCACATATGCTTAATTAATCAATACACCCAGCTCGCCATCACATAGCCCTGGGTGCGTTCCGGCAATTGGCGAATCAGTGCGCTGGCGGGGCCGGTGTGGTGGCGCAGGCCGGTTTCCAGTTTCAGCCGGTCGCCTTGCCAGGCGAGTGCGGCAGTGAGCATGCAGCCGCCGTCCTGTGGGTGGTACAGCACGTCAATGGCCGGTTGCCAGTTGTCGTGGGTCCAGCTGAGCCGGGCAAACAGGGTGTTGCGGTGCAGGGCGCTGGCGGTGTTGAAGGCGGAGGCTTGCCAGGCCTGGTTGCCGGCCACGGCCTGGGCCGGTGCGCCGGCGCGGGCCAACTGGGCCAGTTCGGCGTTGTGGGCGGCCCAGCCGCGCCAGCTGGCGGCGCTGGGGGCGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1239557-1241598 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019509.1 Aquaspirillum sp. LM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1239557 29 100.0 32 ............................. ACGAGACGGCTGCCCGAAAGATCATTGCTGAC 1239618 29 100.0 32 ............................. CCGCGCTGGATGCTGCCGACCTGGACGCCGAC 1239679 29 100.0 32 ............................. ACGCCATCGCGGGTGCCATCTTCATTTTCGTC 1239740 29 100.0 32 ............................. GACAGGATGAGCCAGAGCCCAGCCTAGTGCGC 1239801 29 100.0 32 ............................. CGTTAGAGATATTGCAGAACGCCTTTCCTGGG 1239862 29 100.0 32 ............................. AAAACGGACTTGATCTGCGCGCCATTGCCCCG 1239923 29 100.0 32 ............................. CGGCCAGCTTGCCATCTGCCCGCGAGATGCCA 1239984 29 100.0 32 ............................. AACTCGCTGCTGTACGTGGTGGATGCCGATGA 1240045 29 100.0 32 ............................. CTTGGCATCACGGGCCAGGCGGCAGATTACGG 1240106 29 100.0 32 ............................. AATCGCTTGCCGGACAGCGAGCGGAATCTCAT 1240167 29 100.0 32 ............................. GTCATTTGAGCCAGGCGGCCAGCTGGGTGCGC 1240228 29 100.0 32 ............................. AAAGTCCGCGCGGCTGACTTTAGCCTCAATAA 1240289 29 100.0 32 ............................. GCTGCGCTACTGGCCTCACGCGGATCTATGTT 1240350 29 100.0 32 ............................. CCAGATCCTTGTTTCGAGACATTCCTCGAGGA 1240411 29 100.0 32 ............................. AGCACGGAGCACAGGTCATCCCTACCGCTTTT 1240472 29 100.0 32 ............................. GCGCGCACGCTGGATGAACTCCAGAAGGTGGC 1240533 29 100.0 32 ............................. TCTGGGTAAAAAAATCGGAGCAGGTGTTGACA 1240594 29 100.0 32 ............................. GTGCTCGCCCGTTTTCGACCGGCGTTCCTGCG 1240655 29 100.0 32 ............................. AATGGCGTCGCCTTGGATGAGGTTGATCCGGG 1240716 29 100.0 32 ............................. CTGTGCACCGTTCGGCATGCTGGCAATGGCAC 1240777 29 100.0 32 ............................. GCGCGACTGGTAGCTACAGTTGCGCCGCGTCT 1240838 29 100.0 32 ............................. TTTCGTATTCAACGCATCTATCGTTTTCACCT 1240899 29 100.0 32 ............................. ACGATCAAAAAACCCCTTGGGGAGCGTGACAC 1240960 29 100.0 32 ............................. TCACCTTACTCAGAATGGGTCGCATGGAACCC 1241021 29 100.0 32 ............................. TTCCGTGGCCAGCGTGACCGCGACGGAAACGT 1241082 29 100.0 32 ............................. ACCTCTGATGCGGCCATCAAGGCGCTGCACGA 1241143 29 100.0 32 ............................. CACGCGGCTGTGCATGCGCTCTCAGCGCTTCA 1241204 29 96.6 32 ............................C AACGCAGACGGGTCACGACTGGAGCCGGACTT 1241265 29 100.0 32 ............................. GGCGACGCTAAAGCCGACGATACGGCGGGTGG 1241326 29 100.0 32 ............................. CGCCGGAGCGACCGGCTCACGCGCCAGCAGTT 1241387 29 100.0 32 ............................. GATGGATTTCGCCGCTGCGGCGTGTCGCACAG 1241448 29 100.0 32 ............................. TAGAGCGGCTGGGGCGCAACACCCGGCCCGGC 1241509 29 100.0 32 ............................. GCCCTGTGATTTTTGGCGACGTGATCGGGCAT 1241570 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.8 32 GTGTTCCCCGCAGACGCGGGGATGAACCG # Left flank : GCCCGAACAGCCGCCCAAACGTGTCATGAGAGGGAATGCCGTGTTCCAGCTTGAGATAGCGACGAAACCATGTCAGTTTCTCGTTGGCCCAGGCTTCGATCTCGACGAAGGTGTCGGCACCGGCCAGTACGCCGTTGACGGCGACCACGAGCACTTCGACCAGATCGTGCCGTGTCTTGCGGGTTTGGCGAGGGTCGGTGATGGAGACAAACACATCCGCTAGCTGCAACTTGCCTTCTGTCTCCATGAGTCGCTCCCAAAAAGCGGGACGCTACACAAATCAGGGGCAGGTGAACAGTCTGGGGCGTCATGGCTTGTAGGCGTTAGGGCAATGGCATTCATGCGATTGCCCTGGGTATCCTTGTTGCTGGCTGGATGGCCTGTGACAGGGCTTGAAACATCGCTCTTTGAACAAGCTGACCACGCTACTTACCCACCTGAAAATCGGTAGATTTTGACGTGGGTGAAAAGTTGTTATGAATCAATTGTTTATTTTTGGT # Right flank : GCGGATGGGGCTGCTGATGGATCGGCTGATGGATGTGATGCGCGCCAAGGTGGAGCAGTTACGGTCTGTGGTGTAAGTGGTGAAAATGGAAGCCCCCAGAAACGGGGTCTTTTATATTTTATGCATATTGTGACATGATGATGATTTTCAGAGGGGCTATCATGAGGGTTGATGATCGCGGGTTGCTGGTCATTGCCGGTGTAGTTTGTGCGGCAGTTGTCGCTGGTGTCTGGTGGCAGCACAATGCGATTGTGCGCGATGCTGAGCGTGCGTTGCGTGCTGTTGCGGTTGTGCCGGACTCGGCACGCATTGACTCGTATGAGCAGCGCGATGATAGGCTGTGCGGAACCTGGAGCGGAAATAACGCAATGGGTCAGCGTTTGCAGCCTGCCCGGTTTGTTTACCGAGCAGCATCAGGCGGTCTGGACATAGAGCCGGGCCGTTTTAGTGATGACGATTTGCTGCATCGCATGTTCATGATCAGCTGGCAGAGCTACTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1711184-1710872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019509.1 Aquaspirillum sp. LM1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 1711183 36 100.0 34 .................................... GCTAAGATCTTGGCCGAGCAGTTCGGCTATTCGA 1711113 36 100.0 33 .................................... CCTTGAACTTGAAATCGCTGGTCAGCCGGAATT 1711044 36 100.0 32 .................................... TGAGCAAGTCGCGGAAAAAAGTGTTGATAGCC 1710976 36 100.0 33 .................................... TCGTAATCCAGCGAGTGTAAGCTTGCATCCAGC 1710907 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 5 36 100.0 33 CTCTAGTGGTTTCCCTGATCTCTAAGGGATTAAGAC # Left flank : ACAAATGAACCCCGTGATGACAAGAAACCCCTCCCTGGTTATTTTTTCAGCGTTGACTTGACCCCGGCCCCCTCAAATAAACGCTGGTGGCAAAAAGAGATGGCAAAACCCATGGCCAGCTTATATGCAGCCCCAAAACTCAAACACAGAAAAACCCAACACAGCCTTGCCACCGAAAAACTCAAGCGCCTGGCGTCAAAGCCAGTCATCTTGCCTTCCCCGCCGCTATGCATCCAAACACACGAAAAAGCCGCCACTGCCTTTTTGTTCAGGCTCATCAGTTTGCTGCAAACACTCGGCACAGTGCCCGCCATTGATATGGACAAATACGCACAAAAATTGATTTCGCCACCCAAAACCGACTAGGCAGACAGCATGAAGTGCGCTACTATCGCAAGGCGTTTCGGGGGTGTCTGGGGAGACATCTCCCCGCCCGGAGCGAAAAGTTGGGAACACCCTCTGCAAGATGCTGATTTTGCAAGAGAAAAGTAGGGGGTGCT # Right flank : TCTGCTACGCAGTCAGCCATCCGTGTGACCTGCGATGACAAAGTGTTGCAAATATCCAACTTAGGCTAAATTTTTCCGTAAAAACCAGTCTCGCGGGCTATCAGTTTCACAGCCATCAGGCATATGATTTACGCATCCACTGTGCGGAGAAACGGCATGACAAGTTCGCGTCTTGTTTTTCCGCTGTGCGATGACATTGCTGATCCCAAGCGCTGGCGCAAGGTGCACGAAGCAGTGCAAGCGCATGCTGTCAGTGGGCAAAAATCGGTGTATGAATGCTGGCTGACCGCAGGAGAGCATCAGGCTTTGCTGGCGCGGCTGGAGGCGGTGATTGCGCCAGCAGAAGACAAAGTGCATGTGTTTGCGCTGGATGCGCGGCGCAAGGTGCTGCGCTTTGGCGTGGCGCGCGCGCCGCAGTGTGATCCTTTCCTGATTGTGTGAGGCTTGTCATGAGCTGCCTGTATGTGGATCGTCGCGGGGTGGATTTGCGGGTGGATGGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTAGTGGTTTCCCTGATCTCTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 2154900-2154090 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019509.1 Aquaspirillum sp. LM1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2154899 28 100.0 32 ............................ GCGTATTTATTGGACGCTATATGTCCATCTAA 2154839 28 100.0 33 ............................ CAGATCAAGCAGGAGCAACGCAATGCAACCGAG 2154778 28 100.0 32 ............................ AAGGGGCTGGGGGCGAGCTGGACCCGGCGCAG 2154718 28 100.0 32 ............................ ATCATGTCGCTGCTGAAACGGTTTTCGTTGTC 2154658 28 100.0 32 ............................ GATCAACCACCACGCCCAGGGGTAGCATTACC 2154598 28 100.0 33 ............................ CACGCCCGAGAGCTGCCCAACGATGGGCCTAGA 2154537 28 100.0 32 ............................ TAGGCGGGCCGCACGGCGATGGCTTTGTTATC 2154477 28 100.0 32 ............................ TGGTTCGGCGCTCGTCAGCGGCGACGCGGGCC 2154417 28 100.0 32 ............................ GCAAAACGCGCACTTCAAATGGACGACGACAC 2154357 28 100.0 32 ............................ AGCCCCGCAGCAGCGCCCTGGGCCGTGATGGT 2154297 28 100.0 32 ............................ TGAGGGGCTGGGGGCGAGCGCAGCGCGCCCCG 2154237 28 100.0 32 ............................ AGGTCAGCGTGGGTCATCGGTTGCTGGGCGCT 2154177 28 100.0 32 ............................ AAAGAAACTTGGCGGCAAAGCTCAGCTCTTGG 2154117 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTGAACTGCCGAATAGGCAGCTGAGAAA # Left flank : GGCCAGCTACCTGCGCGACACCCGTCCAGAACGCCGGCTGGCGCGGCTGCGCGACAAACTGGCCAGCAACCTGGCCCGGCTCAGCGACACCGTGCGCCAGCACTTTCCCGAAGGCACCCGCCTGACCGCCCCGCCCGGCGGGTTTTTTCTGTGGGTGGCGCTGCCGGAACACTACGACACCCTGGCACTGTACCCACACGCCCTGAGCGCCGGCGTCAGCTTTGTGCCCGGCGCGCTGTTTTCCCCCAGCGGCCGCTTTGGCCATTGCCTGCGGCTGAACGCCGGCTTTGCGCTGGACGACGCCGTGCTGGCGCGGCTGGCCGGCGTGGGATGGACAATGGGCAACGGGTAAGTGCCTGGCAAGGCGGAACCCTTTTTTTGTGGGGACAGGAAGAGGATTGTAAAATCAATGACTTATGGAAAGCAGAGAAAAGAGGGTAAACTGGAGGTATTGCTGGGAAAACGCCGATGTGGCAAGGACTTGGCAGCGAGGTGGTCTA # Right flank : ACACGGCATTCTCCGCGCTGTGGTGCCACTCGGTGAGCAGCTTGCACAGGCCCGCATAGTCCAGTTTCTTCTCTGCACGCTCGTAGCGCGCCTTCTGCAACGCCAGCGCCTTGTTGAACACGAAGCGGCACGAGCCAGCGAAGCGGCGCATGTCGCGCTGCTGTTGGCCGGTCGGCATCAGTTCATATTTGTAGGCTTGAAGGCGTTGCATACGGGTATTTTTACAGTCCATACCCATTGATGGCAAGGACGGCTACGCCGTCCGCGCTACCTTTCCCCGCCCTGAACGGCGGGACTTGCCGCGCACCACGTCAGAGGGCCGAGGCAGAACTGCCGCTGACCCTCTGTTCCCTGTGCATGCTGCATCCCAGATGGCTGTTGCGTGTGTGCGGCCCCCTAGCTGCGCAGTTCTTCCCGATCGCGGAAGTGCTCAAGCGCTTCCGGGTTGGCCAGCGCGCCCAGGTTGTTCACCGGCTCGTCGTGGATCACGTTCTTCACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGAATAGGCAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //