Array 1 40471-39467 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOUB01000002.1 Escherichia coli strain sz16 NODE_2_length_311887_cov_102.554187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40470 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 40409 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 40348 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 40287 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 40226 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 40165 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40104 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40043 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 39982 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39921 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39860 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39799 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39738 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39677 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39617 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39556 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39495 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57648-55972 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOUB01000002.1 Escherichia coli strain sz16 NODE_2_length_311887_cov_102.554187, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57647 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 57586 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 57525 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 57464 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 57403 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 57342 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 57281 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 57220 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 57159 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 57098 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 57037 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 56976 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 56915 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 56854 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 56793 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 56732 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56671 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56610 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56549 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56488 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56427 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56366 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56305 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56244 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56183 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56122 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56061 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56000 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //