Array 1 1247-2138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPR010000008.1 Bacteroides fragilis strain MSK.22.78 LEECADFH_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1247 47 95.7 30 ...A......A.................................... TTTATTGGATGTGGAAAACATACAGGGGTT 1324 47 100.0 30 ............................................... GCTTCAGGGCTTCCGTATCTCTAAAGAAAT 1401 47 100.0 30 ............................................... TAGCTCCTTGCAGGTTGGAAACACTTCCGC 1478 47 100.0 30 ............................................... TTCCCGGACGTATCGACGAACGAAAGAGAA 1555 47 100.0 29 ............................................... AATTAGCGAATAAATGCTGATGGCCAGTA 1631 47 100.0 30 ............................................... GCCTCTCGTTCCGGTAGCTTCATTCACAAG 1708 47 100.0 30 ............................................... TAAAATAGTCGGTTCTTATGGATGGGGATA 1785 47 100.0 30 ............................................... TAGCTTGAAGTTGCACCGGTTAACTGTGCA 1862 47 100.0 30 ............................................... ACTCCTATCGCATTAGCTGATCTTATGTAT 1939 47 100.0 30 ............................................... GCCAAAACAATATATGCAATGGCTGAGAGA 2016 47 100.0 29 ............................................... ATAACACTGTAAATCGCCTCGTAGAGCAT 2092 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 99.6 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GGTGGGAAAGACTTTTATTTCAGGGATGGAAAGAACAAAGCTTTTGCTTCCAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGTGTGTTAAATCAAGTAATATGAAGAGAAGAAACAAGAGGAGAAAAAGGGTTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CAGATTTCACATAACATATTGTTCTTCAATAAGTTAAGAGTAAATTAGAAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGTGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 33505-34112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPR010000015.1 Bacteroides fragilis strain MSK.22.78 LEECADFH_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 33505 29 100.0 34 ............................. TGGAAGACTATCTTAATAGTTTCATTGATACCTA 33568 29 100.0 35 ............................. TTACGTGAACAAATTACAGGAGTTAAAGGAGAATT 33632 29 100.0 35 ............................. AGCTGAAGGCTACCACCTCCAAGTTCGCCACTACC 33696 29 100.0 35 ............................. TATTTATAACTCGGTTTATTGCATGGATTCCCGCA 33760 29 100.0 37 ............................. AAAGTATTCAAAGTAGTTCTGGAACTCCGGGATATAA 33826 29 100.0 35 ............................. TGCAGAAAAGCTGTTCTTTAGTTTATTTATACACT 33890 29 100.0 37 ............................. TACAGGGGTTGACCGTTGTTGCACACCCGTTTGCTGA 33956 29 100.0 36 ............................. TAAGGTACGATTAATTCTTTGCAACGACACAAAGGT 34021 29 100.0 34 ............................. ATAGTTGTTCTTTTGTAAAATGTTTCATTATTGT 34084 29 96.6 0 .....................T....... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTGGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGTTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : TTTTCATTATCCTTTGGTGTGGCGCGCAAATTTGTGCGCCACTTTTTTAGGTAATTTAGTATATCCCACTCCAGCATCGAAGATGCTTCACTTTCCTTAACTCTTTTTACGTGCCTATATCCGTGTTTTGGTTGCTAAAAATTGTTTTCCTGTTTTGCATGCGATAGCTTGTTCCTCCGAGCCTGATAATCTCGCAGCAGTAGAGCAGCCTGTCAAGCAAGGCGGCTGTGACCGCTTCATCCTCCAATGTTTCCAGCCAACGGGTGAGTGCCTTGTTTGCCGTGATGAAGAGTGATGTCCTTTCCTGGAAGTCATTGACCAGTTTGAACAGCAACACGGCTTCTTCTCTTTTCAAAGGGAACAGTGTGGCATCGTCTATGGCCAGCAGCCGGGCCTTCATGATCCGCTTGTATGTTTTCATCGCATGTGCGGAGACCTCTTTCGTTTTCAGGCATGTGAGCAGCTCCTCCAGTGTCATCAGATATGCTTCGTATCCCGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 93112-93656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBPR010000015.1 Bacteroides fragilis strain MSK.22.78 LEECADFH_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 93112 29 100.0 36 ............................. CGGCATACCAGTATGTACCCTTCATCCCTTACCTCC 93177 29 100.0 34 ............................. CAAGTCTGTGGGAAGACCGTACATAACTACGTGC 93240 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 93303 29 100.0 37 ............................. GTATATCCTTATTGTTATACTCGTCAAGCATTGCAGG 93369 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 93434 29 96.6 34 .....................T....... TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 93497 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCTG 93561 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 93627 29 93.1 0 .........................G.C. | A [93651] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 98.9 36 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : TGTACACGAAGATTCGGGTTCCGTCATAAACGACAGGACCGGAATGGAAGATGGTGTTTCTTCCGGATAAACTGCACGTAATTGTGCACAGTCTTATCACAGACTTTTGGAAAATCAGGATAATGTTCTTTTAAATAGTCGTGGACACGACTGCTGGAAGTGGAAGGAAAGGTGAAGAGTAAGGATACGACGGCCTGCTCATAATTCTGCAGCTTGCACCGGCGTGACTCCTGATACTTCCGGAATAGTTCATCGGAACTCAAAGACTGCAGACGTTTGACCGTATCGCGGGAAACACCAAGACGCTCTGCTGTTCTCGTAATATTGACTCCCCGAGAACGAAGATCAATGATATTACTCCATAAAGTGTATTTTTTCCTTAAATTTTCCGTATCCATAACCTATTAAATAGACTTCGTAATTGGTGTATGTCCGATTACGAATGTTTGATACGGCTAAGGTACTACTCACATCCTTTGGTGAACTTTTTGATTTTCACT # Right flank : TAAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGATTTTTTTCTTCTTTGCTAGCAACATCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACGTTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCATGGATAGACGATACGATGGAAGGTATTGTTTTTGACTATG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //