Array 1 641510-643656 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030928.1 Streptococcus thermophilus strain CS18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 641510 36 100.0 30 .................................... TGTTTGACAGCAAATCAAGATTCGAATTGT 641576 36 100.0 30 .................................... AATGACGAGGAGCTATTGGCACAACTTACA 641642 36 100.0 30 .................................... CGATTTGACAATCTGCTGACCACTGTTATC 641708 36 100.0 30 .................................... ACACTTGGCAGGCTTATTACTCAACAGCGA 641774 36 100.0 30 .................................... CTGTTCCTTGTTCTTTTGTTGTATCTTTTC 641840 36 100.0 30 .................................... TTCATTCTTCCGTTTTTGTTTGCGAATCCT 641906 36 100.0 30 .................................... GCTGGCGAGGAAACGAACAAGGCCTCAACA 641972 36 100.0 30 .................................... CATAGAGTGGAAAACTAGAAACAGATTCAA 642038 36 100.0 30 .................................... ATAATGCCGTTGAATTACACGGCAAGGTCA 642104 36 100.0 30 .................................... GAGCGAGCTCGAAATAATCTTAATTACAAG 642170 36 100.0 30 .................................... GTTCGCTAGCGTCATGTGGTAACGTATTTA 642236 36 100.0 30 .................................... GGCGTCCCAATCCTGATTAATACTTACTCG 642302 36 100.0 30 .................................... AACACAGCAAGACAAGAGGATGATGCTATG 642368 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 642433 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 642499 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 642565 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 642631 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 642697 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 642763 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 642829 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 642895 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 642961 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 643027 36 100.0 30 .................................... AATCAATACGACAAGAGTTAAAATGGTCTT 643093 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 643159 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 643225 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 643291 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 643357 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 643423 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 643489 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 643555 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 643621 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 892927-893179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030928.1 Streptococcus thermophilus strain CS18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 892927 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 892999 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 893075 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 893150 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 963603-962840 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030928.1 Streptococcus thermophilus strain CS18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 963602 28 100.0 33 ............................ TATACCTATATCAATGGCCTCCCACGCATAAGC 963541 28 100.0 33 ............................ CGACACCACTAGGGCGAGTCTGAGCGCCCCCAG 963480 28 100.0 33 ............................ CGCAACCCCTCCTTAGACATGGGAACAGTACTA 963419 28 100.0 33 ............................ CTGTATTATCGGCGAATAGATCAGATTCTTCTG 963358 28 100.0 33 ............................ ACCCTTACAAGGCTGATAGACCTTTGTCGTTTG 963297 28 100.0 33 ............................ CTCGTTTAAATTTGTAGTTATCATTAACAATAT 963236 28 100.0 33 ............................ CAAGGTAAAATTGCCGACAATGTTGGAACGTTG 963175 28 100.0 33 ............................ TATACATTACCTCATTTCCAGCTGAGAACATTG 963114 28 100.0 33 ............................ TCAGCGCCTCGACAAGCATCAAGAAGAACAGAA 963053 28 100.0 34 ............................ TGTACTGGTTGAGTATTCAAGGTAGGTGTGCCAC 962991 28 100.0 34 ............................ ATACTCAACTTCCTTACCCTTAACCCCTTTCAAA 962929 28 100.0 34 ............................ TGGTCGTGTGTTTGGCATTGGCTCAATGGGAACA 962867 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.7 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCTGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATCGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTCCATTGGGATCTTTTAGT # Right flank : TACAAATTTAGGTCATATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTAAAGATAGAGATGCTGTAAAACTTTCTCATAGACTACTACATATTGTTTTAGAGCTATGTTTTTTCTAATGGTTCCAAAACAATCGCTTTCTCTTTATATGCCCACCAAAAAAAAGCCAGTGGCTCTTTTTAAATATCATCTTAATAACCAGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATTCGATAGTCAACATTTGGCAAAGTCTTAACCAAATCATTCAGTTCTTTATCTTTGCTAAACTTATCAGCCAAAACTGGTAATTCAACGACAAGGAGTTGTGAGTGATCTAGTTGGAGGTAACTACTGTTGACCTTGATATCAGGACGAAGTAGTTTAAATATCGCTTTATCCGAAGTTTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1379051-1378223 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030928.1 Streptococcus thermophilus strain CS18 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1379050 36 100.0 30 .................................... AAATTCTAAACGCTAAAGAGGAAGAGGACA 1378984 36 100.0 30 .................................... TACTGCTGTATTAGCTTGGTTGTTGGTTTG 1378918 36 100.0 30 .................................... TTCCTCTTGTAAACATTTTATTAATAATGT 1378852 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1378786 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 1378720 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 1378654 36 100.0 30 .................................... AATGGGAAAGTAGCTATATATGATCCAGAG 1378588 36 100.0 30 .................................... GAAGGCACAAGAAAGTCAAATGCGTAGCGC 1378522 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 1378456 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 1378390 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 1378324 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 1378258 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //