Array 1 298984-300604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTX010000002.1 Listeria seeligeri strain FSL L7-1117 NODE_2_length_306055_cov_44.373439, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 298984 36 100.0 30 .................................... TAGTAACAGGGGAAGTGCTTTCAGCTAGAA 299050 36 100.0 30 .................................... TCTTTTGGATAATCCTCTAATTTGGCAATA 299116 36 100.0 31 .................................... CATTCTTCCGCTTTGTCGCTAGTGTAGGTGA 299183 36 100.0 30 .................................... TTCGCTTCCGGCACGGCCACATAAATGTAA 299249 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 299315 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 299381 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 299447 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 299513 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 299579 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 299645 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 299711 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 299777 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 299843 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 299909 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 299975 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 300041 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 300107 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 300173 36 100.0 30 .................................... TACGCAAAGACCAGATGCTAGCTTTATGCC 300239 36 100.0 30 .................................... CGTTTGCGGATTGCCCTCGTTAACGATTCG 300305 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 300371 36 100.0 30 .................................... AATTTAGCAAACTTTTTGGCTTTGACCATT 300437 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 300503 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 300569 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGGCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 50747-51354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTX010000004.1 Listeria seeligeri strain FSL L7-1117 NODE_4_length_253711_cov_41.077352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 50747 29 100.0 37 ............................. CCGTGATACTACTGGTTAAGTCTCCTTCTTCCATATC 50813 29 100.0 36 ............................. AGTGAAGGACATGCCCACATGGATGCAAAAAGGATG 50878 29 100.0 36 ............................. TGATACACAGCCTACTAATGCAGCTATTATCAAAAC 50943 29 100.0 34 ............................. TAATTTGTTCGGCTTTTTCAGCTCGTTGTTGTGC 51006 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 51069 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 51133 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 51197 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 51261 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 51326 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 57578-59418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTX010000004.1 Listeria seeligeri strain FSL L7-1117 NODE_4_length_253711_cov_41.077352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 57578 29 100.0 34 ............................. ACAGGTACTGGGTCTTTTGGTCCACTAACTCCGC 57641 29 100.0 35 ............................. TTGATAATATCTGACAAATAAGGATTGCTAATTCC 57705 29 100.0 36 ............................. CCTAAAATGTCAGCAAAATCATCTACGCTGGAACCT 57770 29 100.0 35 ............................. GTAACAACGGTGATAAGTCGCTGTAACAGCTCGTT 57834 29 100.0 36 ............................. AATAATGCATGTGATCCAGTGACATCCAAAAATGCC 57899 29 100.0 34 ............................. TGGCATTAAAGGCATACGAGAGTCAGATGCAATG 57962 29 100.0 37 ............................. TCTGTAGTGTGAAAATGATGTGAGGAGCTGGCTAGAC 58028 29 100.0 36 ............................. AACGCTTTCGTGCGGTGGCATTACGATAAGACCAGG 58093 29 100.0 34 ............................. CAATAAATGCAGTAATAACATCCATTTCCGATTT 58156 29 100.0 37 ............................. TTCTTATTATCAATATTTTCAATACTTACCAACTGTC 58222 29 100.0 36 ............................. TATTTTTTTAATTAACAATCGCTTTGATGAGTGCGC 58287 29 100.0 35 ............................. CCAGATAAAACCTGGGATACCTGCTTTTTGATGCC 58351 29 100.0 37 ............................. GTGGTAACAGCGTTTTTGTTGCCGATAGGTGCGCTCC 58417 29 100.0 36 ............................. TGTTATCTACTCCGTACTGTTCAATCAATGGCAACC 58482 29 100.0 34 ............................. AAATTTGAAGAAGTAAAAGAACCGGATGAATTGG 58545 29 100.0 37 ............................. GAAGGGGGTAGCGCTGGGAGACAGTTGTTGTTACTGC 58611 29 100.0 35 ............................. TTTTACTGACCTCGATTCGCTTTTAATTTTTCACC 58675 29 100.0 36 ............................. ACCGTAATTAATAAAGGCAATGCCGCAATTATGGCA 58740 29 100.0 35 ............................. ATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTT 58804 29 100.0 36 ............................. TCGATTAGCGCAAATATAAGCTTCACACCTGCGTCA 58869 29 100.0 35 ............................. TCGTGATAAACCTTTATCACAAAACCGCCATCGCT 58933 29 100.0 35 ............................. CCCATTAAAATAGCAGAAAACAGCACCGCAAATGC 58997 29 100.0 36 ............................. AAAGTCTTTCGCAAAGTGTGCGTCCCCACGCGATCA 59062 29 100.0 34 ............................. GTTGAAGAAGTGGAGGGAAAATAAATGACTTTGA 59125 29 100.0 39 ............................. CTAATAGTAGACGATTATTGGGACGATGTATTCCGACAT 59193 29 96.6 37 .......................A..... TCTTATTTTTCCTCCTCTAAGTATTTAAAAATTACCG 59259 29 100.0 38 ............................. CGAGCTATTGTATCATTTTTGAAGTAATCTAGCTATAA 59326 29 96.6 34 ........................C.... AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 59389 29 86.2 0 ........C....C..A...........G | T [59415] ========== ====== ====== ====== ============================= ======================================= ================== 29 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCAGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGAGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAAAAAACACTAGTATTTTCAGTGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATATGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 69227-70902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARTX010000004.1 Listeria seeligeri strain FSL L7-1117 NODE_4_length_253711_cov_41.077352, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 69227 29 100.0 56 ............................. GATTGAGTTTCGATATGATGTACATTTATCATAAGTGGACCACCACCTTATACGAC 69312 29 100.0 38 ............................. AAAAGTTCACGTCTGCACCTCGTCCCTTTCTGCTAACC 69379 29 100.0 35 ............................. TTTGTTTGAAAGTATACTGTACCAACGTTACCACC 69443 29 100.0 37 ............................. TATTTAGCGATGGGATTAATTTACTGCTGGGTTTCTT 69509 29 100.0 36 ............................. AAAATAAAAGTCAAAGAAGCGACTAAAAAAGGCTTT 69574 29 100.0 37 ............................. ACAAAAGGCTACGCAGATTGGGACCGCCCTATTTGGT 69640 29 100.0 37 ............................. ATCTTTCGAGGTAATGAATTGTTAGCACGTGGCGTGC 69706 29 100.0 36 ............................. ACAATAACAATTTGATTTTCATAATCATGTTTTTCG 69771 29 100.0 37 ............................. CTATTTGCCCTTTATAGTTCAAGTATCAAAGATAAGT 69837 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 69900 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 69964 29 100.0 34 ............................. TTTGATAAATTTGACGTTCTCCCATCACTTTTCC 70027 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 70092 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 70155 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 70221 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 70287 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 70352 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 70418 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 70482 29 100.0 38 ............................. TCGCTTATATGCGAGTTGACAGCCGCGATAATATACTC 70549 29 100.0 35 ............................. ATATAACTAACATTTTCAGCGACGGACGCGTCCAT 70613 29 100.0 37 ............................. CTGGTTGGAAAATGAAAAAAGTGGCTAATGGTTATGT 70679 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 70744 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 70809 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 70874 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================================== ================== 26 29 98.0 37 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //