Array 1 263393-264212 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZV01000008.1 Pseudomonas alcaliphila NBRC 102411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 263393 29 100.0 32 ............................. CCGTCACGGTCTTTACTGATGGCTTCAATGCC 263454 29 100.0 32 ............................. CCCGCGCTTGGCGGGCTTATCGGGATAGTTCT 263515 29 100.0 32 ............................. GCCGCGTAACATGACCGAAATTCTAGACCCTC 263576 29 100.0 32 ............................. CTGACCGGTCAGGGTTAACGCCCTGGTGCCTG 263637 29 100.0 32 ............................. ACCCAGTATTCCAGGCCTGGCTGGCCGAGCAA 263698 29 100.0 32 ............................. ACCCTGCGCAGCGGTGTCGAGCGCCGCAATAT 263759 29 100.0 32 ............................. TCGCTTTCGGTCATCGCGTCGCACCAGCCAAC 263820 29 100.0 32 ............................. CAGGCGGATTCCAGCTTAGCCCGGAACCGCAA 263881 29 100.0 32 ............................. GAAGCCGTGCAGTTCGGCGAGTCCATCGTGGT 263942 29 100.0 32 ............................. TCCGCCTTGCCGCGCACGAACAGTTCGCCGCG 264003 29 100.0 32 ............................. TCTTCTGGCTCGATGGCTACCCACGACTTGCA 264064 28 96.6 32 ................-............ TTATTGCAGTCCACCAGGGCGAAAATCGGCAT 264124 29 100.0 32 ............................. GTCGTAGGGTTATGCCCCTCGACAGCGGCAAT 264185 28 86.2 0 ...-........T.............GT. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : AGGAAACCATCATGCCGCGCCTGTACCGCGAGGCGCCGGTCAACTCGATCTGGGAGGGCTCAGGCAACGTGCAATGCCTGGACGTGCTGCGCGCTATGTCCAAGGAACCCGGTGTGCTCGATGCGCTGTTCGCCGAGCTGGGTGATGGCCACGGCGATACCCGCCTCAAGGCGCACATCCAGCGGCTCAAGGCAGATTTCGCTGACACAGCCGATATCCAGTACCGCGCCCGTCAGCTCACCGAGAACATGGCCGTGGCACTGCAGGCCAAGCTGTTGCTGGAGGCCGGCAACAGCGTGGTCAGCGACGCCTTTATTGCCAGCCGCCTGGAAGGGTGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCACTGCTGGCGCGCAGCACACCGAATCTGCTTTGATGCAAGGGCGATCTTTAACAAGGCAAAGTTGGTAGATTTTTAGCGCCCGATTTTTCCTTTTAGGAACAATTGGTTACGCTAAGT # Right flank : GCTCTGGATGACGAGTTGGGGGGATGCGCCGGCCATCCAGCCGGCGCCTCAGGGGTCAGTCGTCGCTCTCCAGCACTTCACGGCCGTTGAGCGCCTGGATCGGGCGGGCGTTCTTCGCGTACAGGTGCTGGAACTGCGCCAGTTGTTCGTGGGACAGCTCGACCGGCTGTTTGAGTACGCGCCATTGCACGTTCTCGCTGCACGGCGGGGTGGTCAGTGAGCCGGCGAAGGCGTAGTAACCCTGTTGCTGTGGCAGTACGGTTTGCGGAGCGAAGCTGCCTGTCAGCTCGACTTTGTCGCCCGGCTTGTCCGGCATGGCATTGAACACGGACTCCAGTGCCTGGTTTTTCTCGCCTTCCTTGAACAGCACAGCCACTACCGCCAGACGGCCATCCGTAGTCTGGTGGACGAAGTGAGCCACCATCGGGAAGCCCTTGCCTGCAATGTGCTCTTCGCTGGGTGTATGGAAATGAAATTGCACCAGTCGATAAGGCTTGCCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 238562-237333 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZV01000010.1 Pseudomonas alcaliphila NBRC 102411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 238561 28 100.0 32 ............................ ACTTGGAGAGCGCCGCGCCGCCGCTTGAGTTC 238501 28 100.0 32 ............................ ATCCCGCGCGGGCACTCGCTTTTGATGTAGCT 238441 28 100.0 32 ............................ AACAAAAGCATTGATGTTAGCCGCGACCTCAA 238381 28 100.0 32 ............................ ACTGGAAAAGGTCTAGGGCTGCGCTCATGAGG 238321 28 100.0 32 ............................ GCCATCGCCGCCTGCCGAGCGCTGGGCATCGA 238261 28 100.0 32 ............................ TGATAGCTGACCCACCCACCGTCGCTGTTGCG 238201 28 100.0 32 ............................ TCAACTGGAGAAAGACACCTGGCCGACGCAGG 238141 28 100.0 32 ............................ AGCGCCCTGGAGGGCGAAGCTATGTCCACGGA 238081 28 100.0 32 ............................ GAACTGGACCGATGCGCCTATCGGCAACACCA 238021 28 100.0 32 ............................ GGCACGGTTGCGCGCCTTCTGATGCTCGTTCC 237961 28 100.0 32 ............................ TCGATCTCGGCCTGCTGCGCGCGGTCGAGCTG 237901 28 100.0 32 ............................ TACCCATCGCCCATCAGACGACGCAGGCGCTC 237841 28 100.0 32 ............................ TCGATATGCTCGCCTGGTCAGAGTTGGGCGAG 237781 28 100.0 32 ............................ ACTCCCATCGCTCGACTGGCAGGCGCCGCCTG 237721 28 100.0 32 ............................ ACGCACACATAGCGAGGATTGATCATGTCCGA 237661 28 100.0 32 ............................ TTCTCCAGTGGCGCCACGATATGGCCGAGCCG 237601 28 100.0 32 ............................ TCGGTGCACATGGTCATGTGCTCTACGCGGTC 237541 28 100.0 33 ............................ GAACAGCTCGTCGAGAGAGATGCGCTGCTCGAT 237480 28 100.0 32 ............................ ACTCGAAGAAGGTGACGCCACCCTAATACGCC 237420 28 100.0 32 ............................ CCTTTGCCGGCGTCAGCCAGCAGACGTGGCAG 237360 28 78.6 0 ...........C.........C..TGGC | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.0 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AGGCGCTGGATCGGCTGATGGCCCTGAACTGGCTCACTGGAATGCGCGACCACCTGACCCTGGGTGAACTGGCGCCGATCCCCGCGCAGGTGCGCTGGCGTTGTGTCAGCCGCGTGCAGGTGGACAGCAACCCGGAACGCGCCCGCCGCCGCCTGATCAAGCGTCACGGCATCAACGAGGCGGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCCTACGTCACCTTGCGCAGTAAAGGCAGCGGCCACAGCTTCCGCCTGTTTATCCGCCACGGCCCGCTACTCGACGCCCCAACCCCCGGTACCTTCGGCGCCTACGGCCTCAGCGCCAAGGCCAGCGTCCCCTGGTTCTGACCCTTTTTTCGGGATAAAGAAAGACTCTTTAAAAATCAATAGCTTAAAAAATTGCTCAAAAAGAGGGTCAATCGCAGTAAAAAGCCAAACCCGCTTTGCCGAGCAAGGTGTTACGGCTTTATGGTTCTA # Right flank : CGCCCCAACCGTTCGTGAACGGGTCGTGAAACCACGAAGAAATTCGCTCCTACAGCAACCACAGGCTCAGGCCAGGCTACGAAACATCACATGGCAATCGACCAGCCCATGGCGGGCATGGCGGTAGGCCTTGGGAAGGGTACCGACGATGGCGAAGCCGTGCTTCTGCCACAGCGCCACGGCAATGCCGTTGGTGGCCACCACGCGGTTGAACTGCATGGCGCTGAAACCCATCTCGCGCGCTACCTCCAGCGAATGGAGGCAGAGCCGGCTGGCGATGCCACGCCCGCGTGCGGCCGGCGCGGTCATGTAGCCGCAGTTGCATACATGATCGCCCGGCCCGGCCGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGCCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGCTCCACCCAGGTTTTCCAGGCCGTTTCACGATCCATGTTTGGGTCGAAGGCGTAGGTTTCCTGCGCCTGCACCACGTCACGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 249631-249062 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCZV01000010.1 Pseudomonas alcaliphila NBRC 102411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 249630 28 100.0 32 ............................ AGCACGTAACACGCGCCCTTCGGTATTGATCA 249570 28 100.0 32 ............................ AGTCGACTCATCTGTCAGGGTTGCCGTTCGCT 249510 28 100.0 32 ............................ TAAGCGCTTCCAGGGCAAGAACTTCAATGACT 249450 28 100.0 32 ............................ GTGAAGGCCGGCCGGCTGCTGTTCCTCCCCAC 249390 28 100.0 32 ............................ TTGCGCAGGGCGAGTACGTCCATTTGCAGCAG 249330 28 100.0 32 ............................ CGGGGAACTGAGTCAGCAGCGGCGCACTGATC 249270 28 100.0 33 ............................ CAGTGTTCGGCGCCGAGGCTGATTTCATCGTCA 249209 28 100.0 32 ............................ CGGCGTACCTGGCGCACGACCCGGCCACCCGG 249149 28 96.4 32 ......................C..... AGCAGATCAGCGACGACCCCATGACGCAGGCG 249089 28 82.1 0 .....................CC.AC.C | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.8 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : ACGCCCAGCCCGGCCATCAACAGATGGCTGAGCCAATAGGTGGCAACATAACGCAGCCAGAATGTCAGGTCGCTCGCCACATCGTTCATCAGCCAGCCGATCAGCGATATCAGCATGCTGACAACGCTCATCGCCAGGACCACGCCCACCAGATGCAGTGGCAGTACCGGCAATTGTCGTGAGGCCGATATCGGCACGAGCGGTTCGGGCGCGAAGGGGTTGGGTTCGGTCATGGGGCGATCCTTGTCGTAGATGTAGTCCCTGAGGGTTGCTGGGAGAATAACCGTCATCACGAGGGAAGAAAGTGCGAAAGCCTGTTTGCGTGCAGCTGTCGATGTAAGTGATCGGCTTTACATACCCTGATCGACATACCCTTTTTTCCAGAACCCATTTCCATACCTTTAAAATCAAGCACTTGGTTGAGGATGGGAAAAAGGGTGAAGCCGCCGCGGCTCGGGCTTTGGCCTTGAGAAACAATCACTTGCCCTCTATCTTCCCTA # Right flank : TTGGCACCCACAGCCAAAAGGACTTAACTGCAGGCACTGCCTCAGGAGCCTTTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTTCACTCAAAGCGCGCCAATCTGTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGCGGGCGGGTGGAGTATGTGACCGATGCAGGCAAGCAGTCGCTGTACTGGAACATTCCCATCGCCAACACCACCACCATCCTGCTCGGCACCGGCACTTCGATCACCCAGGCGGCGATGCGCGAGCTGGCCAAGGCCGGTGTACTGGTGGGCTTCTGTGGCGGTGGCGGTACGCCGCTGTTTTCAGCCAACGAGATGGATGTGGAAGTGGCCTGGTTCTCGCCGCAGAGTGAATACCGCCCCACCGAGTACCTGCAGAAGTGGGTGAAGTTCTGGTTCGATGACGACAAACGCCTGGAAGCGGCCAAGGCCTTCCAACTGGCGCGTCTGCAACGCATTCGCCGGAGTTGGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //