Array 1 59364-58981 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAWO01000011.1 Corallococcus sp. AB038B NODE_11367019_cov_25.8451, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 59363 28 85.7 45 .C....C................C.A.. TCCGCGCATCGGCCGGGACGGAGATCCTCCCTGGGCGTGGGGTTC 59290 28 100.0 45 ............................ TCCGCTGCCAGGAGGGGGCCGGGGCCCACCCTGGGCATGACGTTC 59217 28 96.4 42 ...........C................ CTCGCTGCCCGGGTGGAGCGGGGCCCACTGGGCCACGGGCTT 59147 28 100.0 42 ............................ CTCGCTGCCCGGGTGGAGCGGGGCTCACTGGGCCACGGACTT 59077 28 100.0 41 ............................ TCTGCTGCCCGGGCGGAGCGGAGCTCCCGGGCCCTGGGCTT 59008 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ============================================= ================== 6 28 96.4 43 CAAAACTTGTCGGACAGTCGGACAGGTT # Left flank : TGACTGTGGGCGTCTCCGCGGGGCTCGCGTTCGGCACAGCGGTGTACTGCGCCGCGAACCGAGTGCTGCCGTGGGCCCTGGATCGGCGAGGCGACTGGGAGTTCGGCCTGTTCCTGGGCGCGTGGGGGCTCGCTGTGATCATCGCGCTCGTGCCACGAGGGTCGTCGCGCCGGGTGGGCAGCGTGCTGAGCGCCGCGGCCGCGGTGCTGTTCGGTGCGGTGGTGGTGGGCGACGTGGTGACGCAGGACGCGAACCTGTTCACGGCGCTGTCGCGCGGTCTGCCTCCGGTGTTCATGGCGGAGGCGTTCCTGGCCGCGATGGCGCTGGGTTGTGGCGGGCTCGCGTGGGGTCTGCGCAGGCGCAAGACGGCGGAGCCCGTGTCCGGTGGCGCCGCGCCCGAAGGGCCTCTCGTCAAAGCGTAATCACAGGGGCTGACATTCGCGCGAGACGCGCTGGGCCCCGGACTCCCATGCAGTCCGCCCCCTGCCCGACGCGGTCCG # Right flank : TTTTCGGTGCGCCACCGACGGGGCGCACCGGCGGGGTTCTTACCTTCTCACCCAGGGGGACAGCCTTTGTGTCCGCGGACCTGTCGCTGGGGGAGAAGTCCCGTCAACGCGTGACCGTGGCGCTTCCGGCGTCTCGAGGCGCGGCGCCCGGGAACGACCGAGGCCCTCGCTGGCGGAGACGTGCCAGGCGAAGGCCCCAGGGATTTCGCGGTGTGTGTGATGGTTTCAGGCCCTTCCGGCGGTGAGGCTTCCGGAAGGCCCCTTCAGGCCTGCGTGATGGCTACCAGGTGTAGCCGACCGTGGCGGACGCGCGGCGGCGCTCGCCGTAGAAGCAGGCCGTCGCGGAGCTGCACGAGGACACGTAGGTCTTGTCGCCCAGGTTGGAGGCGTTGACGGCCGCGCGCCACGGGCCGCGCTCGAAGTGCACGCTCGCGTCCACCAGCGTGAAGCCCGGCACGTCCAGCGTGTTCTCGCGATCCGCGTAGGAACTTCCCACGCCG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAAACTTGTCGGACAGTCGGACAGGTT # Alternate repeat : CAAAACTTGTCCGACAGTCGGACAGGTT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 346-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAWO01000426.1 Corallococcus sp. AB038B NODE_444381_cov_0.968504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 345 37 100.0 31 ..................................... GCGAGCTTGACGGCGATGCTCGGAGGCCTCG 277 37 100.0 35 ..................................... TCCCGAACAGGCTTACTGTCCACGCGTCACTGGGG 205 37 100.0 35 ..................................... GATTACCGGGGTGAACCCTCCCGAGATTCCCCCCA 133 37 100.0 36 ..................................... TCGTGACGCCCGTACCGGTTGAGGGCTTCGGCCAAG 60 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 34 GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC # Left flank : AAACCGCTCCGAGGACCTGTTCAACCACCTCGCCA # Right flank : CGTCGCGTACCGCAGCGCACTCCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2048625-2048925 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAWO01000001.1 Corallococcus sp. AB038B NODE_12742029_cov_25.9051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 2048625 24 95.8 44 ....C................... GACCTTGGCGGGGCTCCCGCGCTGCCCCGGGCAGCTGGAAAACG 2048693 24 100.0 45 ........................ CGGACCTCAGCCGGAAGATCCAGTTCCATCCCGACGGCAGGAGCC 2048762 24 100.0 46 ........................ GGAACCGTGACCGGACCCTCGGCGCTGGCTCATGGACGCGGAAACT 2048832 24 91.7 46 ....C.................A. GGACCTTGGCGGGGCGCTCGGGCGCTGGCTCCGGACGGCGGAAACT 2048902 24 91.7 0 ....C................T.. | ========== ====== ====== ====== ======================== ============================================== ================== 5 24 95.8 46 TGTCGGACAGTCGGACAGGTTGGG # Left flank : CCCTGCCGAGGCCGGACGCGTTGTTCGCGCTGGGACTGGATGGGCCCTGGTACGCGTCGGTGCATTCGGCCTCCGCGAAGCTGGCCCCGGAAGGGGGCGCGATGGTGCACGTGGCGAAGTACCTGGGCGGCTCGGACACGGAGGCGAGCGAGGCGGCGCTGGAAGCCGTGATGGACGCGCTCCAGCCGGGATGGCGCGCGAAGGTGGTGGCGCGGCGCTACCGGCCCTCGCTCACCGTCAGCGCCGGGCTGCCCCGGGCCGTGAGCGGCGGGCTGACCGGGCGTCCCTCCGTGGAGGTGCCGCACGTGGGCGGCCTGTTCCGAGTGGGCGACTGGGTGGGCGCGGAGGGAATGCTCGCGGATGCATCCCTGGCGAGCGCCGAGGCCGTGGAGCATGCCCTGGTGCGACGCACCGCGACGTCCCAGCGCAGCGCGGCGGGAACTTGAGGCGGATGGGCGCACAGGCCAGGAGCCCCTCCCCGGCGGCGCCGCGCAAAAACG # Right flank : GCCCGGTCCGGGCCCGGAGGGGCTCGGCGTGGAGATTCGGGAGCTTGGGGTACCAGGCATCGCGGCGTTCCGGTGATGCTCTTGGATTGTTGGAACGTGAGGGCTTGAACGGGATGGATTCACAGGCGCGAGGAGCACTGGGACAGGCCGCACGCGAGCACGAGCGCTTCCTCTGGGGGCTCTGCTACCGGATGACCGGCGTGGCGGCGGACGCGGACGACCTGGTGCAGGACGTCTATGCGCGCGCGCTCGCGACGCCTCCGGAGCGCCTGGACACCCTGCGTCCCTGGTTGACCCGCGTGGCGGTGAACCTGGCGCGAGACCACCTGCGCCGCCGCCGTCGCGAGGGCTACGTCGGTCCCTGGCTGCCTTCGCCTTTGGAGACAGGCGATGAGGAGGTCCCTCCCTCGGTGGAGGCGAGGCTCCCGGGCGGCGGCTCGACGGAGGGACGCTATGAGTTGCTGGAGAGCGTCTCCTTCGCCTTCCTCCTGGCGTTGGAA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGGACAGTCGGACAGGTTGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 2615825-2616147 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAWO01000001.1 Corallococcus sp. AB038B NODE_12742029_cov_25.9051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 2615825 29 93.1 46 C........................G... TTCGCGGCCCGGCTGAGGAGAGGGCTCGTCCCGACCGACCGAGTTC 2615900 29 100.0 43 ............................. TCTCTGGCTCGACTGAAGGGGGAGCCCCTCCCGGCCGAGGTTC 2615972 29 100.0 43 ............................. CCTCTGGCTCGACTGAGGGAGGCGCCCGTCCCGGCTGAGGTTC 2616044 29 96.6 46 ..G.......................... TCCGTGGTTCGGCTGAAGGGGGAGCCCCTCCCGGCCGACTGGGCTC 2616119 29 93.1 0 .G.G......................... | ========== ====== ====== ====== ============================= ============================================== ================== 5 29 96.6 45 TCCAAACCTGTCCGACTGTCGGACAAGTT # Left flank : ACAGGAAGAGCAACTCCAGCGCCTCATGGCGCAGGGCCGTGTCCGCGACGACGGAGGACTCGCTCTCCGCGGAGGACATCCGGCACACCGAGATGATGACCTGTGGCTCGAAGCCGAGCGCATCCAGGCCCGCCTCCGCGGTCTCCTCCCGTGTCAGGTCGATGCCGTGGATCCGCGTTCCCGCGTCGGAGGCGCCCGAGCGGAGGATGCGGAACTCAGGGCCGCAGATGTCGTGTGCCTGGGCCGAAAGCTCCCGGGCCACGGCCTCGTCTTGAGCGATGAACAGCACCCGCCGGCCACGCAGCTGCGACGCTCCAGTCGTCAGTGCCGGACGCTCGACGAGCACCGGCGCGTGGTAGCGGATGGGCGCCGAGTGGTCGAAGCCGTCGGACGCCTCCGGGATGGAAGTGGCGGATGCCGCGACCGGTGCGATGGCTCCTGGTGCAAACGGAGCGCCAGTCCCACGGACATCCAAGGTGCCCGCCTCCGGACCGGAGCGG # Right flank : TTCCGTGGTTCGCCGCCGACAGGGCGGTCCCGCCGAGGTCTCGATTCTCAGCACTGGAGACAGAGGAGATGCCCGAGGACCTGGCGGCTTTGTCCATAACGCGGCGCTCCGCGGACAGAGGTCCTGCCGCCACCGCTTGTTCCTCCGGTGCTCCAGTCTGGGCTCCGAGGTCAGGATGAAGCTGGAGCACCAGCTGGGTGCCGGTCGCGGCATCCGGATGGAAGCGCAGCGTGAGGGCCTGTCCTTCGGCGGCGGCCCGCACCGCGCTCAGCACCTCCCGCGCTTCGTGGGCGGAGTGGGGCGGCAACGTGACGCCCGCCCCTGAACCGGAGCCCGCAGCTTCGGACATCCGCAGGTGGCACAGCGGCCTCAAGCCCCTCGCTTCCGCCTTCGCGGCCGTGGTCACCGCCAGCATCGTCATGCCCTCTTCGGGCGCGGATGCAGCGGCGCTTTCTCCGGGCCTCTTCACGTGAGCGCTGCCCACGAGCACCAGATCGAAG # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAAACCTGTCCGACTGTCGGACAAGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //