Array 1 10149-9393 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKP01000004.1 Streptomyces sp. PanSC9 Ga0299889_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10148 28 86.2 30 ..T.........T....-..........C TGCAGGTGGGGTGGGAAGCTTGGGCTGCTC 10090 28 89.7 31 ........-.T.................T GCAAGCGTTTTACGGGACCGTGATTCAGAGC A [10074] 10029 28 82.8 32 ............-.....CA.......TC CCCACCGGCGTGCACGGCATCATCGTGCACCA 9969 29 100.0 32 ............................. TAGCAGCCTCGGATGTGGGTGCTGCGGCTAGG CCG [9953] 9905 29 93.1 30 ......T.....................A CGGTGGCAAGGAAACGTGGGTCTGTTTCGA 9846 29 93.1 32 ..T.................A........ GAGCACCCGGCGACGGAGGAGCAGGCCGAGGA 9785 29 86.2 32 ..............T.......G.C...C TGGGCCGACTAGGCCCCGAACGCCTCAGGGAG 9724 29 96.6 32 .................A........... ATGTCCTGCTTGGTCATGCCAGCCAAGGGATC 9663 29 96.6 32 ...........C................. ACGAAGGCATACCGGAGGTCCGCTGGCTTGTC 9602 29 93.1 32 .....................A...T... TACGCGATTCCGATCGGCGCCGACGGGCAGAT 9541 27 86.2 32 ............T....--.........C CGTGAGGCTCCGGGGCTTAGTTGTGCGAGTAG 9482 29 96.6 32 .........................T... CCCTACCAGTGGGGCGGCGTTGGTCCCAACCC 9421 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 13 29 92.1 32 GTCGTCCCCGCGCCCGCGGGGGTAGCTCG # Left flank : AGTCATTGGTATCCCCCCGGACATCGCTTGGCGTTGTCAGTGTCGTGCATGGGTATGACAGGGTGGCCCAACTCCTACTGCCCGCACTAGAGGTATGCCCCAGATAGTCGAAGAGTTACCAACCTTCGAGTGACCAACACCACTCATCTGCAGCAAACAGAGGCCCCGTCCGAACACCTGGGCGTGGCCACTCACGCATGTCTGGTTACGTGGCTTCCCCCAAGGCCGCCGTCTGCGGGTTTCTGACCACGTACCGCACCCAGCTCGGTGTCAGCCCCAGCGGATCGGCCAGTATCTCCACCGGCACGCCCCGATCATGTGCCTGCCGCAGCGCCTCATTCCGCCGCCGCCTCATCTGGCGGGTGGCTTTCTTACTCGCGCTCGTCCGATGTAGCACCGCCGCCGACCGTAAAACAGCTGGCCAGCCCGGTCGTTTCACCACCCGCGCATCAATCCCTGATGAGCAACTGCACAGCACACCACCGTCACGGCGGCAGAGT # Right flank : GGCGGCCATAGCCTGAACAGGACACATGGGAGGTCGACTCCTGGCGAGCAGCGAGCGGCGCAACGGTAGTTGCTTTCGAAAGGCTCCACCAAGCACAGGTTCGAGTGGAAAAGTGCGGTTCACCTGACGTGATCACGTGTCTGGGTGTACGGCTATAGCGGTGCTTAATGGGTAGAAGAGCCAATTTTTGTGCTGTTTGCCGCCGGGATCCCGGCCCCGTGCGTCGTGCCCCGGTCTGCCGCCCGGAACCTCGACGACCAGGCCCTTGGCCCCTCCTGCGGCGGAGTCCTAAGCGCCCTCCGTGCGGACCCCCGTAAGCACCACAGAGATGCGTTGCTGCGTCCGGGACTTCGGGAGATTCGCCGGTGGCTACGGCGACCGAGGCGGGACGGGTGTGTAGCCGGTCTACCTCCCGCGACACGTGAGTCTGCCGTTGTGTATGAGCCAAGCCCCACATCTGGTGGTTGGATGGCTACAGCAGCCCACAAGTTGTGGTCCCC # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13746-11604 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKP01000004.1 Streptomyces sp. PanSC9 Ga0299889_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 13745 28 82.8 32 ...........C.....T...-....CG. GTCGGGTTCAGCGCGCCAGCTGGCGGGCGGGG 13685 28 89.7 24 ...........A.........A...-... GGTTGAGGCGTACCTGTTCGCGAT Deletion [13634] 13633 28 82.8 31 .....T.............A.-...T..G GTCTCCGTCGGCGGCCGCGATCCCGCATCAC 13574 29 86.2 32 ...........AT....A..........G ATGAACCCGAACTGGCAAGCGCTCAGCGTCAT 13513 29 93.1 32 .......T....T................ GCTGCACAGCGTTTTCCGGAGTATCACCCACC 13452 28 93.1 31 .....................-......T AGGCGACGGCCATGGCACACCACGCGCCGTT 13393 29 93.1 33 .......T....................T CGAGGTGCCCCCGTGACAGAGACCCTTCACCCC 13331 29 86.2 32 A...........T.............A.G GGTTCCGGCTCGTACGTGGGCCAGGTGGCCAA 13270 29 96.6 32 ..................C.......... CTGGACGGGGCGCAGCGTCACCCGACCCACCA 13209 29 100.0 32 ............................. CTCACCAAGCTCGCCTCGATGGGCTACGGCGA 13148 29 96.6 32 ............................T GACAAGCCCACCGTGGACGGCCCGTTCCCGAT 13087 29 96.6 35 ............................G CGCGACGGGAAGACCCGGCACTGGATGGTGCCGTC 13023 29 93.1 32 ...C........................T CTCTACGTCATGGGCGAGGACGAGGTCCGCGC 12962 29 96.6 32 ............................G CCGTTCTCCGCGCCCGGCTGGAGACCGAAGTC 12901 29 96.6 27 ............................G GGCGGGAACCCGCCGACGGGCGACAAC 12845 29 69.0 32 .A..AGT.GT.CT...............G AAGGTGAAGGCCGCCGCCCGCCGCAAGTTCCC 12784 29 96.6 32 ............................G GCAAATTGGTCGCGGGGCGTCCCCCGACGCTC 12723 29 93.1 32 ..............G.............T ACGGTGTACGGAAGAGGCATCCGCCCCGTCTG 12662 29 93.1 32 ............T...............G TGGCTGGACAAAGGCGACTGGGGCCCGGCGTT 12601 29 96.6 32 .....................A....... ATCGAAGAGATCGCGGCGATCATGCCGGTCCC 12540 29 93.1 32 ............T...............G CAGACCGTCGACATCTCCGCGAAGGTCAACCA 12479 29 100.0 32 ............................. TCGGCGGGCACGCCCCGCAGTCCGCCTCCCCC 12418 29 96.6 28 ..........................C.. CCCCGACTCTGACCTGTGAGGTCGCCAT 12361 29 96.6 32 ...........................T. GTGACGCCCGGGATGGAGCTCCGTATCGCTGA 12300 29 100.0 32 ............................. GTCCACCGCGACGCCGAAGCCGCCGCCTACTG 12239 29 100.0 32 ............................. GGCAACCTCCGTACGCTCGACGGCCGGTTCGC 12178 29 93.1 32 .......G....................G GCAGGCGAGGAGTACTGCCGCTACGAGGTGTG 12117 29 100.0 32 ............................. CGGATGACGCCTTCGCGGTCGACGTAGTGCTC 12056 29 100.0 32 ............................. GCGGCGATGGCTCCCGGGATGTCGGGCGGGTC 11995 29 96.6 32 .................C........... CCGGCCTGTTACCCGCAGTCCGGCAGCTTCCC 11934 29 93.1 32 ............T...............G CACAAAGGGGGCATCCCGGAGAGGTGGGGGCC 11873 29 89.7 32 .........A..T...............G GTGGGCTTGTCGGACGGCGTGGACGAGGTCAG 11812 28 79.3 34 ........T....T.......T.-.A.T. CACGAGCGGGACGGACGGTAGTGGCCCATTGCCG 11750 29 82.8 28 ........T.....G.G......CC.... GCCGCCCGCCGACAGACATCAAGGGCAG TC [11738] 11691 28 82.8 32 ..T...........TTT....-....... ATGTACATCCTGAGGATTACGCGGCCGTCGAG 11631 28 72.4 0 ...A...T......-.T..A.....T.TG | ========== ====== ====== ====== ============================= =================================== ================== 36 29 91.9 32 GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Left flank : GCCCACCGCACTGCCACCCAGCAACTCCAATGGCTCCTCAAGCGATCAGAACGCCACGGCTTCAGCATCCCCGACGCCACCACTACACCCCCCGGCCCCGGCCTGCAGACCGAGAATCAGGACCTGACCGCCGGACCCGCGGTGACCATTACCAGCCGCGACATCCTCCGCTTCCACAAACGCCCCGACGGCCCCCGCGTCACCCTGTCCACCGCCACCTTCGAAGGACGCCTGCGTGTCACCGACCCCGACACGCTGCGCGCCACCCTCCTCGGCGGTATCGGCCCCGCCAAGGGCTACGGACAAGGCCTGCTCACCCTCGCCCCACTCCGCACCACCGAGGCGAACCATGACTGAACCTGGGTGGCGAACCGGACCGCAGGACGTGCACCGCCTCGACGACCGCATCTCCAACCTCTGTGCCGAGCGCTGCCACATCGACCAGGACGACAATGCCATCGTCCTGGTCGATGTGGCGCGCGCCGTCCATGTCCCGGCCG # Right flank : GCTTCACGACACCCGAAGACTCAAACCCATCCCAGCGCTGGCCCGTCAGCCGCACCACATGACGAAGGCCCCGCCCTAAGCGGGTGGGGCCTACGCTGCTTCTCAGGCCTGCTTCTCTTGCTCCCGGATGAACTCCGCAACAACGGCCGTGTTGCGGCGCATCGCGGCACGCAATTGGTTCCGCTGGAACCGATCACGACCCTCGTCTACCACTCGCTGCCAGCCCTCCCGCCCGTCAGCCAGGCGCTCGCTGACGAGGAACTCAATGATGTCCTCCAAGCTCGGCCGGAAGCGGCGACCACCGACAGGGAAGTGCAGCTTCTCCAGTGGTCGCTTCTCGTCTCCCGACCGATTTAATGCCTCGAGCGCCGGCGACAGGCCATGCACCTGCAGGTGAGCGCTGGTGTACTTGTCCTTCTCGCGCTCATAGTCGAAGTGGCACAAGCACGTCTCCAGCTCCTCGTCGGAGAAGATGCCACAGTACGACTTGTAGACCGTCA # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23069-24655 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJKP01000004.1 Streptomyces sp. PanSC9 Ga0299889_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23069 28 100.0 33 ............................ CTGGGAGGCGGTCATCGGAGTAGCCACGTCAGG 23130 28 100.0 33 ............................ CCGGGTCAACAGGTAGAGATTCGCGAGGACCGC 23191 28 100.0 33 ............................ CCAGTACAACCGCACTCACGCGCTGCTCATGGC 23252 28 100.0 33 ............................ CACCTGCACGGCGTTGGCCGACGTGAAGCGGAC 23313 28 100.0 33 ............................ CTGCTCGAGGTTCGCTTCGCCGGTGTTGGTCTC 23374 28 100.0 33 ............................ GTAGACGTCGGTGTCGTGGCCGCCGCATGCGGC 23435 28 96.4 33 ..............T............. CTCCCCGTGTGGGCGATCGGCCTGACCGTCCTC 23496 28 92.9 33 ...........G...T............ GGCGTCCAGGTGGTACAGGTACGTCCCGCTACC 23557 28 96.4 33 ..............T............. CTTGGTGGTGGCCGCCCCCAGGCTCACCGTCTT 23618 28 100.0 33 ............................ GGGCCAGTTCGTCATCGTGCCCGAGGAAATGCT 23679 28 96.4 33 .............T.............. GATCCCGGTCGGCGAGTACGAGCACATCCGGCG 23740 28 82.1 33 .G......T............AA.A... CCGCACGTACGGCAAGAAGAGCGACTACCGGAC 23801 28 96.4 28 ......................G..... GACGGTCACCGTCAGCGCACTGACGAAG 23857 28 78.6 33 .AA.GGT....T................ CGCCGAGCCGATGATTAAGATCCCGGCCTCCCG G [23867] 23919 28 92.9 33 ...........G.........T...... CTCGTCCAGGCTGGTGACCAGCGTGTCCACATT 23980 28 100.0 33 ............................ GTACCTCAAGCCCTTCAGCACGCTGGCCGTCGG 24041 28 82.1 33 .G..........GT..A.......A... AATCCGGACGGCGCGCACCTTTGGCCCGGCTAC 24102 26 85.7 33 A................--...A..... GATGGACGTGAAGACCAACGGCGACCTTGAAGT 24161 28 89.3 30 .......T...G....A........... GTCAGGGCGGCGCGCCTGGGAGCGCAGCAC 24219 28 96.4 33 ............T............... GGGCGACGGCGTCACCGACGACACCGCGGCGCT 24280 28 82.1 32 .G..C....T.G..T............. GGAGTACACCGTGGAGGCCGTTGGAATCGGCG 24340 28 78.6 26 .C.C...T...........T.A...T.. GGTGCTGAAGCAACTGCGTGCGGACG A,C [24345,24353] Deletion [24394] 24396 28 78.6 20 .C.T..G.....A....C...C...... CCGAAACCTCGAGGTCACAC T [24402] Deletion [24444] 24445 28 89.3 33 TC..........A............... GTCGTCCAGCCAGGGCAGGACGAACACTCCGTC 24506 28 85.7 33 ..T........TT.T............. CCGGCGTAGGAATTCTTCCCAACTGACTGTCTC 24567 28 96.4 33 ..T......................... CTGATCCTTCTTCATCTGGGCGCCGACTCCCGT 24628 28 67.9 0 .C......T...G.........CCCTGG | ========== ====== ====== ====== ============================ ================================= ================== 27 28 91.3 32 GTCGTCCCCGCACCCGCGGGGGTAGCTC # Left flank : TGCCGCCCCTCCGGCAGCCGCCCCCACGTCAGCCCCGCCGCCAGGACCGGCGCGGCCTCGGCCGCATCCCTGGAACGCCGGGCACGCCTTCCCGCAGTCGTGGATGCCGCACACCCACATGAACCACAGCCGCCCCCAGCCACCGCTGACCTCGTCCAGCCGCCGCCGGAACGCCGCCCCCAAATACCCATCCCACATCACCCCCGCCACAGCAGCCGTATCCAGCAGATGCCCCAACAGCAGATGAGTCCGGCCGCCATGATGCGCAGCCGACTTCCCCCACAACCGCGACACCCGCGCGACGACCTCATCAGCCAAACCCATCGACCGCATCAACTCCACGACCGACCGCTCGTCCCCCACACCGCCCCCCGAACACTCCACCCCACGCGCTCCGTTGAGCCGGCACTGTAAACGGCACCACTGACAACACCCCCGCAAAGCCAGGCGACATGAAGGAAAACGGGTACCCTCACCTGCATCACCGCAGATCAGGAAGT # Right flank : GTGGCCTGGGTTGGCCGCGGTCGTCGCCTCCGGTGCGGGTATCGGCATCGGCTGTCTCCTGTGGGCCGCTCCGGACAACGCTGCGGCGGATGCCGCGGGCGCGTGTCAAGCGTGGAATCGGGTTCCGGCGTTGAGCGAGATCTACAGCAACGACAAGACTTACAGCGCCTACTTCGCCCGCGTCGGCGGTGCTGCCGCTCTGGCCCAGTCTGCGGACCAACTCGACCGCCGCTACGACACCCTGGACAAGGCCTTCCAGGACATCACCAGACGCCTGCAGACCCTCACCGTGGAGGGCGCCGGGGCAGTGGCCGCCCACGGCAAGGTGACCACCCTCTGCGCCCGCCTGGACAACTGGCCAACAGACCCCGAGTCCCTGCCCCCGGTCCCAGCTGCTGGAGCCGATGGAGCAGCTCCGCGGCTTGTTCCTCGCCACGGTCGTCGCGTGAAGAAAGTTACGCGCGTGCGGGGGGCAGGTCGTAGCGGCTCACCGCCACATA # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACCCGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCACCCGCGGGGGTAGTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-44] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //