Array 1 303368-303924 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYM01000001.1 Oceanobacillus sojae strain NBRC 105379 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 303368 32 100.0 34 ................................ TGTGGAATATAAAGAGGGGTGGATAGCGACACCT 303434 32 100.0 34 ................................ TTGACCTATGTAATTAACAGTTAAAAGGAGAGGA 303500 32 100.0 34 ................................ GCACCGATGAATGACGTTCCTAAACTAAATGCAA 303566 32 100.0 34 ................................ TTATCTTACTGATGGTGACGGAGAAACTGAGGTA 303632 32 100.0 33 ................................ TACTCTAACCGCTTGATACTCTCCTGCAGCAAC 303697 32 100.0 33 ................................ CGGAACTAGATAAAAAGAAAAAGAAGAGGTGAG 303762 32 100.0 34 ................................ ATGTGCAAGGGGACGAGCTGCCATCTTCTCAAGA 303828 32 100.0 33 ................................ TCTCGATCACCACGCTGAAATGAGTTAAGCAGT 303893 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 9 32 100.0 34 TTCGCATCCTATATGGGTGCGTGGATTGAAAT # Left flank : TACGGATAAGCATTATGTTTTAAAAGCTCCGCATCCAAGTCCTTTATCAGCACATCGCGGTTTTTTTGGATGCCGTCACTTTTCAAAAACAAACGCTATTTTAAAACAGGAAAATCTTACTCCTATCGATTGGCAGCTTCCTATGAATGTGAATCCGGATAATTGATTTATTGCCAGATTAAAATTGAAATATGCTTGATTTTCTTTAGGGAAAGTCTTTTATAAGCTGTGTTGTTGAAAAGATAATAAAGTCAAAAGTGTTTATGATAAAATAGTATTATTCATTATTTCCGCATACCTTGAAATTTTTTATCTTACTTTTATTTGATCAGGTGCTAACCCAAAGCAAACATAGATTATTAAGGAGATTAGCACCTGTTGATTTATAAAGGTTTTACCTCTTGTTTCTATGAAATTAATACTAAATATCAGGAGTAAAATACAGGTTAGCACTTTTGTATATATAAACCCTTACTGTATATAGAGAATTTATGTGCGCT # Right flank : TGTGGAAATTGATAATCAACAGACTATAAACAAAAGCCGCCGTCACAGCTTTAGGAAAAGTAGTGACAGCGGCTTTCTTTTATTCTGATTATGAGCGGACATAAGATCCGAATTGATTATTTACTTTTTCAATAATCTCCTGATAAGAAGCATCCACTTCATCATCCTTTAACGTACGGCTCGGGTCCTGGTATAGAAGACGGTAAGCAACAGATTTTTTACCTTCTTCCATATGCTCTCCCTGATAGACATCAAATATAGATACCTCTTTTACCAATGGAGCTCCGATTTCCTTGATAACTGCCTGAACATCACCGGCAGGAATATCATTGTCCAGGATAAAAGCAATATCCCTGGTCACAGATGGATAGCGCGGAATATCTGTGAATGAAGGTGTCAGCTGATGAACTGCGAACACAGATTCCAGATCTATTTCAAAGACATATGTTTCCTTCACATCAAAATCTTTTGCAGTCAGTGGATGAACCTGGCCAACATAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCATCCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 205694-205135 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYM01000003.1 Oceanobacillus sojae strain NBRC 105379 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 205693 32 100.0 35 ................................ CCAAATACCGCGTTGACTTAATCGCTTAGCCGGGT 205626 32 100.0 34 ................................ CACAAGAACTCAATCTAAGAATTATAATCATGTT 205560 32 100.0 33 ................................ CTCCACCATCGCCAGCCATTTTTGCGCTGGTTA 205495 32 100.0 34 ................................ AGGAATACCGAATCACGTATGGTGCTGGCTACTT 205429 32 100.0 33 ................................ CGGCCAGAGGTCACGGTCATCTTCCGTGCCTTT 205364 32 100.0 34 ................................ AACGAATAACGGATTATCTCCGACTGCAATAACA 205298 32 100.0 35 ................................ ATACAGATGAACAAGTACCTGAAATGGGCATAACT 205231 32 100.0 33 ................................ AAAAGCGCATGACATAGAGATAGAGAATATTTC 205166 32 71.9 0 ..A...CT..G...AA....A.AA........ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 96.9 34 TTCGCATCTTATGTGGGTGCGTGGATTGAAAT # Left flank : AAATCCTTCATTTTTAAACAAAATTTAAATAATACACTTAGCTTGTCTATACTTTATTCTTCTTTCTCTGCAATGACCTTTCTTACTTTAAATGGACAAAAATGTATGATGGTATCTTATTTTTTAAGCAGTTAATATGCTTTCAAATTCTACATAGATGCGTAGATGGAAATAAAATTGGTAAGTCGTTCAAGGTATGTATGTGGGGTAATTAGTTATGATTATCATTTGTATTTATGATAAAGTAGAATTATATTAATTGGTTATGCAGAACTTATCAGAATAGAGAAAAACATTTTATGAATATATTTCAAGCAAATTATTCTTTAAGAGGTGCTAACCTGAAGCAAACATGAATTACTAGGGAGGTTAGCACCTCTTAATTTATAAGGATTTCATGAGGTTTCAAATAAAAATGAATCAAAAGGCGGGAAGTTAGATTCTGGTTAGCACTTTATTGTTTATAAAGACTTGCTGTACATAGCTTTATTATGTACGCT # Right flank : ACACCCTATATAACACAATCAAAACTTCCAACTCAAGATAAAATAATTCCATTAAAAAACCATCCTCATACAATAAACTAATAATGAGGATGGACTTAATATTTTTATTCTTTTTTCCTAACCATAACGCAATATCCGCTCTGCAGCCTTTCTTGCACCAGCAATATTTCTAGAAACCGGCCCAATCTCCAGCTCGGCTAATGCTCCAGCTACAAAAAGTCCATTTTTCCATTCAAGTGACTTCGGAACAACCGGAAATCCGCATGGCGCGCAAGGCAATCCCATTTGCTTAATTATTGGATCTAGCCATTCCTTGCCTGGCATTGCAATTGCTGGACCCGTTGCCAGCATAATAGAGCTTTCCTTCAGCTTTTCTTGATTTTCCATAAAAAGCTGCATTTTCCCATCAGTATCTTCTCTTATGTCCTCAATACAGCCTGTATGAATATCTAGTCTTCCCAATCTCTCCTGCTTCAACAGTTTTAAATATAAATCCCTGG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCATCTTATGTGGGTGCGTGGATTGAAAT # Alternate repeat : ATTCGCATCTTATGTGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 215562-215333 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYM01000003.1 Oceanobacillus sojae strain NBRC 105379 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 215561 32 100.0 34 ................................ TAACAGAGTTCGCACCTTTGACGATATTAACATC 215495 32 100.0 33 ................................ CAGCATAATTACTCTGGGTCTGACTTTTATTGC 215430 32 100.0 34 ................................ CAAGTGCTGCGCTCGTTACAAGGGTACTGTCTGC 215364 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 4 32 100.0 34 GTCGCATCTTATATGGATGCGTGGATTGAAAT # Left flank : AATAATATCACGATCGCTTGTCGCCAAAGGATTAATAATGACGTTGATAGAAGCAACACCATCTATCTTATCTTTTAAACTTTCTAATTCATTTTTGATTTTCTCTGCATTTACTTTCTTCTCTGCTTCACTGAAATTGTCACGATGATTCCATTGTACAATATGTTTTATCATGGCTTACAGCTCCCTGTTCATTTTATAGTTAAAGTTTATCATAGTCTTGCTTCCTTCACATAGATAACTTATTTATATAATTCTCTAATTTTTAGAATCATTTGATATGATTTTTTTAGAATGATAAGGTATAAGTAAGGAATTTAAAATTAACATTGGTTGCTAACCTTAAGCGAACATAGCTTACTAAGGAGGTTAGCACCCTTTTTATAGCAAGGGGTTTAGAGAAATACCCTAATAATAAAAGGAAATAATTTCAAACTTTGATTAGGTTAGCACTTTTTTCGTCTTTAGGCCTTGCTGTATTAAGGTGTTTTATGTGTGCT # Right flank : TTCGTAGTGCTTATAAAATAGGTACACCATGTAGTCGCATCTTATATAGATGCTCATGACCCAGCACCTCCAACATAAAATGATGAGGTGCCAAGGTATCTCGTCTTTTCATGTTAGAGGCGCTGCTAACCTTTTTTCTGCACAGCCATCCAAATCTCACTATATACATTCTCTAGATCGCTATAATCTTCTACAAAAGAAATTCCCGGCGCATCAACTAACTGATAATCCGAGGAAGGAAGCCATTCTGAAGCAATTTTCGCCCATGTTTGCTGCATTGTTTCAGGGAATGGCCCTTGTGATGAGAAAAGGACCCAAATATGATTAGGCACTTCCAGCACATCCAGCCCTTCAAAGGGTCCTTCTTCATCTGTCAATACGCCAATCATATGCTCTAAATAGCCTTTCTCATGCACTTCTTTGCCCTCACGTAATCTGCTGCCTTCATCATAATTATAAGAAGCATTAATTACTTGCTTAGGCTCTATATTAGCGTATTG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTATATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 22097-22524 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJYM01000030.1 Oceanobacillus sojae strain NBRC 105379 sequence30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 22097 32 100.0 34 ................................ TTGTTTCGGTATAACTACCTAAATATACGTTAGT 22163 32 100.0 34 ................................ AAGATTTCCCAATCATTATTTATGATGAATTTTT 22229 32 100.0 33 ................................ ACGCTCCCCTTTTCAGCTGGCCACAAGATAAAA 22294 32 100.0 35 ................................ AAGATAGAGAAAGGATAGCGAAAGAGTCCCTCAAC 22361 32 100.0 33 ................................ TTTGGATTTGCTATCTGATTGCCAGATAACCCA 22426 32 100.0 35 ................................ AATCGTGCCAGCTAGTGACGGTACTTCTGTAAAGT 22493 32 68.8 0 ...G..T.C....C.AT.AT.C.A........ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 95.5 34 TTCTCACCTTATATGGGTGAGTGGATTGAAAT # Left flank : TAGTCCTGGCGCTTGTTATTATAGATTCCGTTTTGTATTCTTTCTGCTCCTCTCCATTTTTATTTGCTCTTGTCAAACGGACTTTTACATTTGGAAAACAAGAACTTTCTATATTTTATCGGAAAGTCATATTATAGGTCAACCTTTTTCTTCCTTTCCGATTAAAATAGTTTATGAAATCCTTTGAGAAATGTTGCAGAATATACACAAATGACTGAGTGAATGCAGGCTAGTATATGACTAGAAGAATGTTTGAAGAGGATTGGAGCAGAATGGTATAATTAAAAATATTAAGAAGGATTCAGGAAAATTTTTAGTTGGATGGATAAATTAGTGCTAACCTTAAGCAAACATGAATTACTAAGGAGGTTAGCACCTCAATGTGTATAAGGTTCTAACGGGATTTGTTAAGGATAATGCTTCTTTATGTTCCTTTTTATAAAAGGTTAGCACTTTTTATTATTTGAAAGCTTGCTGGACAAGGGGTTATGTTGTCCGCT # Right flank : TGGTGCTACAACAAAGAAATGCTCAAAAAAACAGAATATAAATATGAGGTAGATAAGAAGAACCAAGCTCATCTCTTTCCATCTACCTCTACATAAACCACACCAAAAAGGAGCCTCCCCATGACAAAAATAATCTGGCTTAACGGAGCTTTTGGAGCAGGTAAAACACAGACAGCCTATGAATTACATAGAAGATTAGAAAATTCCTTCGTTTATGATCCGGAAAATATCGGCTTCTTCTTCAATCAAAATTTGCCTAGCGAGTTAAAAAAGAAAGACTTTCAAGATTACGAAATGTGGAGAGAATTTAACCGCAAAACTATAAAATATATCGTTGAAAACCATGATGGAACAATTATTGTTCCTATGACAATCACAGATATATCTTACTTTGAAGAAATCACTGGAAATCTCGAATCTGAAAAAATCGAGCTGCATAAATTTGTTTTATCTGCTTCCAAAGAAGTCATTGAAAGCAGGCTAAAGAAACGTCTTGAGAG # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCACCTTATATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched TTCTCACCTTGTGTAGGTGAGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //