Array 1 163166-161062 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWOE01000059.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGDFood2016003 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163165 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163104 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163043 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162982 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162921 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162860 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162799 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162738 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 162677 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 162616 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162555 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162494 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162433 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162372 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162311 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162250 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162189 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162128 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 162067 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 162006 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161945 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161884 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161823 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161762 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161701 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161640 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161579 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161518 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161457 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 161396 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161335 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161274 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161213 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161152 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161091 29 93.1 0 A...........T................ | A [161064] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181655-179673 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWOE01000059.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGDFood2016003 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181654 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 181593 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181532 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181471 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181410 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181349 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181288 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181227 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181166 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181105 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181044 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180983 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180922 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180861 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180800 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180739 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180678 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180617 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180556 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180495 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180433 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180372 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180311 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180250 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180189 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180127 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180066 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180005 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179944 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179883 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179822 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179761 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179700 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //