Array 1 155158-152873 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFC01000053.1 Klebsiella pneumoniae strain TUM14699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 155157 29 100.0 32 ............................. AAGAACCTTTCGATCGCTGCAATTATCTACGC 155096 29 100.0 32 ............................. GCGTGGACACGGATGTAGTGCTGGAGAAGGCG 155035 29 100.0 32 ............................. TTTACGGAATTGCTTAGGTCGCGAGAATGTCG 154974 29 100.0 32 ............................. TAGTCATTTGCCGGTGACGGGAACCCCATAGC 154913 29 96.6 32 ................T............ ATTAAATAATTCGTTTACGTCCATGACGAGAT 154852 29 100.0 32 ............................. GTAATCCTGATATTGGCGTATCAATGGTCACG 154791 29 100.0 32 ............................. TAACCTCGTTTATGTGCGCGTTTTATAGTTGC 154730 29 100.0 32 ............................. TGCGGGCCACCAGGGTTGCAGGGTATCAATGG 154669 29 100.0 32 ............................. GCCCAGATCGGCTTTTCATCCCGAAGCCGGGC 154608 29 100.0 32 ............................. GACACCCGCACGCGCCGGGCAGGCGTGGAACT 154547 29 100.0 32 ............................. TCGTCGGGTTTATTGAGTATTCCGCCTGATTT 154486 29 100.0 32 ............................. CAGGTCAGCGCAATGTTCCGGGATATCGAGGA 154425 29 100.0 32 ............................. ATGACAAAACCAAAATTGAGTTTTGGCTGCAG 154364 29 100.0 32 ............................. TTGTCCACTTCACGCCAGTAGTCTTTAGAGAT 154303 29 100.0 32 ............................. AATGGAGGTCCGGTTACTGCTGGAAATGTTTA 154242 29 100.0 33 ............................. ATCCCCACCACCGGCGCTGGCGAGTAGTACCGC 154180 29 100.0 32 ............................. GATTGTCTGACAGATAATGCAGCGCAATGCGC 154119 29 100.0 32 ............................. ATGTGAATTTCCTGGCCGGTTGGTAGTTTGAA 154058 29 100.0 32 ............................. TACTGAAACGGGTAATCAGCACAAATACCAAA 153997 29 100.0 32 ............................. CATCGCTTTATGCCGAAATGAGGATGATAGTG 153936 29 100.0 33 ............................. GAGCTTTCCTCCTCGTATCACTACCGCGCAGAC 153874 29 100.0 32 ............................. ATCAATTCCCTCATTTTTTTTCCTTTAGCTCG 153813 29 100.0 32 ............................. TTCATCTGGTAGCAAACCGCCATCGGGAAGAA 153752 29 100.0 32 ............................. ATTTTTTGGGGCACAATTTGGGGCATTTTTTT 153691 29 96.6 32 A............................ AGGGTTTCGATTTTATCGGGATAGAAATGAAT 153630 29 100.0 32 ............................. TGGCGGACGTTGTACCTGTGAGTTAATTCTTC 153569 29 100.0 32 ............................. ACCGCTCCTCTGACGCCAGGAGGGTGTAGGAG 153508 29 100.0 32 ............................. TCCAGGGGCAAAGAATTGCCCATTATCGTACA 153447 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 153386 29 100.0 32 ............................. CTCGGATAAAATGCCTTGCATGAGGCGAACGA 153325 29 100.0 32 ............................. GCGTCCAGTTGAACCCGGCACATTCCCGCTGG 153264 29 100.0 32 ............................. TACGCAGCCGGATCCAGGAGCGCATGGACGCT 153203 29 100.0 32 ............................. GCACGATATTCAGCATCATCAGGACGGTTCAT 153142 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 153081 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 153020 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 152959 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 152901 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21705-20281 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFFC01000036.1 Klebsiella pneumoniae strain TUM14699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21704 28 96.6 32 ..........-.................. TCCGGATGATGACATTTCGGGTGATAATCATA 21644 28 96.6 33 ..........-.................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCCC 21583 28 96.6 32 ..........-.................. ATTCCGTTCATAATTTTGTAGCTGCCCGCTAT 21523 29 100.0 32 ............................. TTCTCTCCGCCGGGCAGTGTGATGCCGGAGGG 21462 29 100.0 32 ............................. GCAGCGGCCTGACGATGATCGATATGAACGGC 21401 29 93.1 32 .............A...A........... TGAAATTGACGAGTGGATCAATCAGCGTATTG 21340 28 89.7 32 ..........-.TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 21280 29 93.1 32 ............TG............... TAATTTAGGAAATGAATTCTAAAATTGAATCT 21219 28 93.1 32 ..........-..A............... TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 21159 29 100.0 32 ............................. TAAGCTGATCGTTGCCGTAATGCGAAGCGGGA 21098 29 96.6 32 ...............T............. TGACTTTTGATGAGATTTTGTCGATAAAAATT 21037 29 89.7 32 .............G.A............T TCGATGGCAACCACCAGGAACAATAGAACCCT 20976 29 86.2 32 .A......T...TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 20915 29 93.1 32 ............TA............... TCACTTTTGCGTCGAGCCAAGTTATTATCTCA 20854 28 93.1 32 ..........-..A............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 20794 29 96.6 32 .............A............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 20733 29 100.0 32 ............................. TCGAAGGCAACCACCAGGAACAATAAAACCCC 20672 29 89.7 32 .A..........TG............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 20611 28 89.7 31 ..........-..G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 20552 29 93.1 32 .............A............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 20491 29 93.1 32 ............TC............... TTACGCATTGTGATCAGGATTCGCTTCAGACG 20430 29 93.1 32 ............TA............... TCGCCCAGTCCAAAGGGGATGATGCAGGATTG 20369 29 100.0 32 ............................. GGCATGAGCGCGAACCACTGCGAGAGTGTGGT 20308 28 86.2 0 ..........A..A.........-....A | ========== ====== ====== ====== ============================= ================================= ================== 24 29 94.1 32 GTATTCCCCCCGCTTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTACGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTACATTAATCCGCTTTGCAGCCGAGCCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTGAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGTGCTATTTATTATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGCTAGCGTTAAAGGAACATTTAGCCGTGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTATTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACATGATCGGCTTTTCCGTCACATTCATTCAGCTCAGCACCAAAATCACCGCAAACTTCACCTGCATACTGATTTACTTTTTCCAGATGTAACTCACCGAAAAC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCTTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //