Array 1 41139-39463 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYX01000026.1 Escherichia coli strain KS-NP063 sequence26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41138 29 100.0 32 ............................. TGAAATTATCATGCCAGCGCCATCTTGATGAT 41077 29 96.6 32 ............................A TCGAAAAGCTGGCGGTAAACAAAACGCGTGAA 41016 29 100.0 32 ............................. TCGCTTTTGGCTGTCTGGGCGAATTCCGGAAC 40955 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 40894 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 40833 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 40772 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 40711 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 40650 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 40589 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 40528 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 40467 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 40406 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40345 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40284 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40223 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40162 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40101 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 40040 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39979 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39918 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39857 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39796 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39735 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39674 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39613 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39552 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39491 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67539-66839 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFYX01000026.1 Escherichia coli strain KS-NP063 sequence26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67538 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 67477 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 67416 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 67355 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 67294 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 67233 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 67172 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 67111 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 67050 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 66989 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 66928 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 66867 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //